View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4505_low_2 (Length: 682)
Name: NF4505_low_2
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_low_2 |
 | |
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| [»] scaffold0060 (3 HSPs) |
| | |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 36 - 449
Target Start/End: Complemental strand, 8434742 - 8434327
Alignment:
| Q |
36 |
cacatcggaaaactttaatgaaatgtagagagtaagtgagttatataaccatcgtatgacatccaatcagtgcaacaatgattcgatgttgaattgataa |
135 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8434742 |
cacatcggaaaattttaatgaaatgtagagagtaagtgagttataaaaccatcgtatgacatccaatcagtgcaacaatgattcgatgttgagttgataa |
8434643 |
T |
|
| Q |
136 |
gcaaatttcctcaagctttgtttacaactgacatatgggctat-ttttgagggtgttgttgttgataacttatacagggcgatcgatatacaaatttgaa |
234 |
Q |
| |
|
|||| | ||||| |||||||||||| |||||| |||||||||| |||| | |||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8434642 |
gcaactatcctccagctttgtttactactgacctatgggctattttttttgtgtgttggggttgagaacttatacagggcgatcgatatacaaatttgaa |
8434543 |
T |
|
| Q |
235 |
atttttta-------aatttgtaatctgttgttctttataacttcttgtactcttaatttctggagtctatgttaatgtggatcaatttcatgcttcttc |
327 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8434542 |
attttttaaatttgtaatttgtaatctgttgttctttataacttcttgtactcttaatttctggagtctatgttaacgtggatcaatttcatgcttcttc |
8434443 |
T |
|
| Q |
328 |
ttctaacacacatgaagggttgggatggtgatgacgatgaacattgaaatgttattttttaaaactccaatttctacgctgttatgctcttgcttttagt |
427 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
8434442 |
ttctcacacacatgaagggttgggatgg------cgatgaacattgaaatgttattttttaaaactccaatttctgtgttgttatgctcttgcttttagt |
8434349 |
T |
|
| Q |
428 |
gaaatgccttaaaaaatccaca |
449 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
8434348 |
gaaatgccttcaaaaatccaca |
8434327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 523 - 637
Target Start/End: Complemental strand, 8434326 - 8434214
Alignment:
| Q |
523 |
cttagttcattatggtctgaaaattgcttaccaggtttcttctatagagagagatgtgagttcagtaatcatcatgggtttattagaaccaatgcttctt |
622 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434326 |
cttagttcattatggtctcaaaattgcttaccaggtttcttctatagagaga--tgcgagttcagtaatcatcatgggtttattagaaccaatgcttctt |
8434229 |
T |
|
| Q |
623 |
attattcattactaa |
637 |
Q |
| |
|
||||||||||||||| |
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|
| T |
8434228 |
attattcattactaa |
8434214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 8431771 - 8431695
Alignment:
| Q |
29 |
taagtcccacatcggaaaactttaatgaaatgtagagagtaagtgagttatataaccatcgtatgacatccaatcag |
105 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| ||||| | |||| |||||| |||| |
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|
| T |
8431771 |
taagtctcacatcgaaaaactttactgaaacgtagagagtaagtgagttataaaaccaacctatggcatccattcag |
8431695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 8431302 - 8431246
Alignment:
| Q |
469 |
aaaatgtgtgaaaggattttcatgaaatgtaaagattggagagtatgatacttgctt |
525 |
Q |
| |
|
|||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8431302 |
aaaatgtgtgaatggagtgtcatggtatgtaaagattggagagtatgatacttgctt |
8431246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 8431598 - 8431525
Alignment:
| Q |
222 |
atacaaatttgaaattttttaaatttgtaa-------tctgttgttctttataacttcttgtactcttaatttc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| |
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|
| T |
8431598 |
atacaaatttgaaattttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcctaatttc |
8431525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 8432975 - 8432943
Alignment:
| Q |
365 |
tgaacattgaaatgttattttttaaaactccaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
8432975 |
tgaacattgaaatgttattttttaaaactccaa |
8432943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 405 - 633
Target Start/End: Original strand, 76089 - 76315
Alignment:
| Q |
405 |
gctgttatgctcttgcttttagtgaaatgccttaaaaaatccacaggcccagaaattgtatgaaaaaatgtgtgaaaggattttcatgaaatgtaaagat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
76089 |
gctgttatgctcttgcttttagtgaaatgccttcaaacatccacaggcccagaaactgtatgacaaaatatg--aaaggattttcatgaaatgtaaagat |
76186 |
T |
|
| Q |
505 |
tggagagtatgatacttgcttagttcattatggtctgaaaattgcttaccaggtttcttctatagagagagatgtgagttcagtaatcatcatgggttta |
604 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76187 |
tggagagtattatacttgcttagttcattatggtctgaaaattgcttaccaggtttcttctatagagagagatgtgagttcagtaatcatcatgggttta |
76286 |
T |
|
| Q |
605 |
ttagaaccaatgcttcttattattcatta |
633 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
76287 |
ttagaaccaatgcttcttattattcatta |
76315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 75677 - 75953
Alignment:
| Q |
20 |
aaacatcattaagtcccacatcggaaaactttaatgaaatgtagagagtaagtgagttatataaccatcgtatgacatccaatcagtgcaacaatgattc |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
75677 |
aaacatcattaagtcccacatcgaaaaactttaatgaaatgtagcgagtaagttagttataaaaccatcgtatgacatctgatcagtgtaacaatgattc |
75776 |
T |
|
| Q |
120 |
gatgttgaattgataagcaaatttcctcaagctttgtttacaactgacatatgggctatttttgagggtgttgttgttgataacttatacagggcgatcg |
219 |
Q |
| |
|
|||||||| |||||| |||| | ||||| |||||||||||| || ||| ||||| |||||||| | | |||| ||||| ||||||||||||||||| | |
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|
| T |
75777 |
gatgttgagttgataggcaactatcctctagctttgtttacgaccgacctatggtctatttttttgtgagttggggttgagaacttatacagggcgattg |
75876 |
T |
|
| Q |
220 |
atatacaaatttgaaatttttta-------aatttgtaatct-gttgttctttataacttcttgtactcttaatttc |
288 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
75877 |
agatgcaaatttgaaattttttaaattcgtaatttgtaatctggttgttctttataacttcttgtactcttaatttc |
75953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 76023 - 76071
Alignment:
| Q |
297 |
atgttaatgtggatcaatttcatgcttcttcttctaacacacatgaagg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
76023 |
atgttaatgtggatcaatttcatgcttcttcttcccacacacatgaagg |
76071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 460 - 649
Target Start/End: Original strand, 164838 - 165027
Alignment:
| Q |
460 |
ttgtatgaaaaaatgtgtgaaaggattttcatgaaatgtaaagattggagagtatgatacttgcttagttcattatggtctgaaaattgcttaccaggtt |
559 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
164838 |
ttgtatgacaaaatgtgtgaaaggatcttcatgaaatgtaaagattggagagtatgatacttgcttagttcattattgtctgaaaattgcttaccagttt |
164937 |
T |
|
| Q |
560 |
tcttctatagagagagatgtgagttcagtaatcatcatgggtttattagaaccaatgcttcttattattcattactaaaatatgttgtta |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
164938 |
tcttctatagagagagatgtgagttcagtaatcgtcatgggtttattagaaccaatgcatcttagtattcattactaaaatatgttgtta |
165027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 361 - 432
Target Start/End: Original strand, 164753 - 164824
Alignment:
| Q |
361 |
acgatgaacattgaaatgttattttttaaaactccaatttctacgctgttatgctcttgcttttagtgaaat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
164753 |
acgatgaacattgaaatgttattttttaaaactccaatttctgtgctgttatgctcttgcttttattgaaat |
164824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 55778333 - 55778401
Alignment:
| Q |
364 |
atgaacattgaaatgttattttttaaaactccaatttctacgctgttatgctcttgcttttagtgaaat |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55778333 |
atgaacattgaaatgttattttttaaaactccaatttctgtgctgttatgctcttgcttttagtgaaat |
55778401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 55842513 - 55842581
Alignment:
| Q |
364 |
atgaacattgaaatgttattttttaaaactccaatttctacgctgttatgctcttgcttttagtgaaat |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55842513 |
atgaacattgaaatgttattttttaaaactccaatttctgtgctgttatgctcttgcttttagtgaaat |
55842581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 55778945 - 55778982
Alignment:
| Q |
610 |
accaatgcttcttattattcattactaaaatatgttgt |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55778945 |
accaatgcttcttattattcattactaaaatatgttgt |
55778982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 55843125 - 55843162
Alignment:
| Q |
610 |
accaatgcttcttattattcattactaaaatatgttgt |
647 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55843125 |
accaatgcttcttattattcattagtaaaatatgttgt |
55843162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 361 - 432
Target Start/End: Original strand, 28046771 - 28046842
Alignment:
| Q |
361 |
acgatgaacattgaaatgttattttttaaaactccaatttctacgctgttatgctcttgcttttagtgaaat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
28046771 |
acgatgaacattgaaatgttattttttaaaactccaatttctgtgttgttatgctcttgcttttagtgaaat |
28046842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 28047386 - 28047423
Alignment:
| Q |
610 |
accaatgcttcttattattcattactaaaatatgttgt |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28047386 |
accaatgcttcttattattcattactaaaatatgttgt |
28047423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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