View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_low_4 (Length: 402)
Name: NF4505_low_4
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 12221896 - 12221527
Alignment:
| Q |
18 |
actcatactccaaatcttgaacaactataatacatgtatttgaaacaaataagtcaagaattgcattattatttattgaacatgtttaccaaacttttgc |
117 |
Q |
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| T |
12221896 |
actcatactccaaatcttgaacaactataatacatgtatttgaaacaaataagtcaagaattgcattattatttattgaacatgtttaccaaacttttgc |
12221797 |
T |
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| Q |
118 |
ttttccattaatcacaaacaaattaaattccaggagctagtttttgatgtcttcattttggatcctcaaaacatcatgtatgtatgatttcccatgattt |
217 |
Q |
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| T |
12221796 |
ttttccattaatcacaaacaaattaaattccaggagctagtttttgatgtcttcattttggatcatcaaaacatcatgtatgtatgatttcccatgattt |
12221697 |
T |
|
| Q |
218 |
tctgctgaaagtaatccgttgtagaaatctgctacaccaattgttttgaacagtgctggtgtttctggagttacaagagatgatattggacttatatttc |
317 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12221696 |
tctggtgaaagtaatccattgtagaaatctgctacaccaattgttttgaacaatgctggtgtttctggagttacaagagatgatattggacttatatttc |
12221597 |
T |
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| Q |
318 |
caatccattctgggccgtaaaatgctgctatggatagcctctctttttgtgagtttactatagctctgtg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12221596 |
caatccattctgggccgtaaaatgctgctatggatagcctctctttttctgagtttactatagctctgtg |
12221527 |
T |
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