View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_low_5 (Length: 373)
Name: NF4505_low_5
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 8258685 - 8259045
Alignment:
| Q |
19 |
aagttgagtttcaaactatgtttcaattggctcagtaaaaaatgaaaacaatcatattcgagacgtatcagacaataagtacagattcccaaacattgat |
118 |
Q |
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| T |
8258685 |
aagttgagtttcaaactatgtttcaattggctcagtaaaaaatgaaaacaatcatattcaagacgtatcagacaataagtacagattcccaaacattgat |
8258784 |
T |
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| Q |
119 |
ttgtcactgtgagagtctaacgtcttctactaaactcaacccggttggaacacctatacttta---------------------tctcacagttgcagaa |
197 |
Q |
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| T |
8258785 |
tcgtcactgtgagagtctaacgtcttctactaaactcaacccggttggaacacctatacttttatatctctttttatttatacttctcacacttgcagaa |
8258884 |
T |
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| Q |
198 |
tttaagttctcaatatcaatacaataacaaatttgattccctttactgttgttgttttgatatatttgaaatgaaaggttatttggttttttatatcttc |
297 |
Q |
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| T |
8258885 |
tttaagttctcaatatcaatacaataacaaatttgattccctttactgttgttgttttgatatatttgaaatgaaatgttatttggttttttatatcttc |
8258984 |
T |
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| Q |
298 |
atgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaaggtctgtg |
358 |
Q |
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| T |
8258985 |
atgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaaggtctgtg |
8259045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 357
Target Start/End: Original strand, 8256567 - 8256736
Alignment:
| Q |
204 |
ttctcaatatcaatacaataacaaatttgattccctttactgttgttgtt---------ttgatatatttgaaatgaaaggttat-------ttggtttt |
287 |
Q |
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| T |
8256567 |
ttctcaaaatcaatccaacaacaaatttgattccctttattgttgttgttgatactgttttgatatatttgaaatgaaatgttatttattatttggttta |
8256666 |
T |
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| Q |
288 |
ttatatcttcatgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaaggtctgt |
357 |
Q |
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| T |
8256667 |
ttatagcttagtgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaaggcctgt |
8256736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 8256354 - 8256412
Alignment:
| Q |
55 |
aaaaaatgaaaacaatcatattcgagacgtatcagacaataagtacagattcccaaaca |
113 |
Q |
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| T |
8256354 |
aaaaaatgaaaacaatcctattcgtgacatatcagacaataaatctagatttccaaaca |
8256412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 8289397 - 8289441
Alignment:
| Q |
308 |
cactattttccatatgcaaatccaccatcaaccctaagatcaagg |
352 |
Q |
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| T |
8289397 |
cactattttccataagcaaatccaccgtcgacactaagatcaagg |
8289441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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