View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506-Insertion-1 (Length: 942)
Name: NF4506-Insertion-1
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 115 - 445
Target Start/End: Complemental strand, 7905413 - 7905085
Alignment:
| Q |
115 |
atgtttcctctaatgaccgtcctggtatttctgctaattgataaacttaatgacatgctaattcatgtgtgtcaaccttagcattttggtcatgggaaaa |
214 |
Q |
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| T |
7905413 |
atgtttcctctaatgaccatcctggtatttctgctaattgataaacttaatgacatgctaattcatgtgtgtcaaccttagcattttggtcatgggaaaa |
7905314 |
T |
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| Q |
215 |
ctctacaatcttgtgacatgtgcaactaaaaagattagggggaagaccatagtttatcttagtactaagaagtactatagggtagggaggtcacaaatgc |
314 |
Q |
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| T |
7905313 |
ctctacaatcttgtgacatgtgcaactaaaaagattagggggaagaccatagtttatcttagtactaagaagtactatagggtagggaggtcacaaatgc |
7905214 |
T |
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| Q |
315 |
tttggaaaatttgatggtagtggcgtccttcaagtaattgacaaatcattttggtatttctctcatttatgaagatttgtatcatttcatttcaagacat |
414 |
Q |
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| T |
7905213 |
cttggaaaatttgatggtagtggcatccttcaaataattgacaaatcattttggtatt--tctcatttatgaagatttgtatcatttcatttcaagacat |
7905116 |
T |
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| Q |
415 |
ttaatcaaaagtgtaatatttattttagtca |
445 |
Q |
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| T |
7905115 |
ttaatcaaaagtgtaatatttattttagtca |
7905085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 466 - 786
Target Start/End: Complemental strand, 7905093 - 7904774
Alignment:
| Q |
466 |
ttttagtcatttgttgcattatggtacaattcttaatgtcaattttgatttgaaaggaatcttttcttgtttaccctaaatttgtctatggggacnnnnn |
565 |
Q |
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| T |
7905093 |
ttttagtcacttgttgcattatggtacaattcttaatgtcaattttgatttgaaaggaatcttttcttgtttatcctaaatttgtctatggggacaaaaa |
7904994 |
T |
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| Q |
566 |
nntctgaagttagttcaccttgtcaaaataatctactgtgatctctaattgcaccctaatggttgagttaatccaatgatttagagtactagtagatttg |
665 |
Q |
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| T |
7904993 |
aatctgaagttagttcaccttgtcaaaataatctactgtgatctctaattgcaccctaatggttgagttaatccaatgatttagagtactagtagatttg |
7904894 |
T |
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| Q |
666 |
aaatgaatacttttttgtagaggaaatgaatttatttattttttgacaggatgaatacttttcttgttctccctgaaattgacatttgactataaaaata |
765 |
Q |
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| T |
7904893 |
aaatgaatacttttttgtagaggaaatgaattt-tattttttttgacaggatgaatacttttcttgttctccctgaaattgacatttgactataaaaata |
7904795 |
T |
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| Q |
766 |
ttttaaaattaaatcacacaa |
786 |
Q |
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| T |
7904794 |
ttttaaaattaaatcacacaa |
7904774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 880 - 941
Target Start/End: Complemental strand, 7904659 - 7904598
Alignment:
| Q |
880 |
aaaaaattgagtattggccgattaaatgtgatgtattggagttggacggtaacataaaatat |
941 |
Q |
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| T |
7904659 |
aaaaaattgagtattggccaattaaatgtgatgtattagagttggacggtaacataaaatat |
7904598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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