View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506-Insertion-2 (Length: 872)
Name: NF4506-Insertion-2
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 36 - 558
Target Start/End: Original strand, 2955314 - 2955836
Alignment:
| Q |
36 |
ccgcctttctgcgtcttgcgagtgtttcaggttcaataatatttgccgtttcaaaataaaattacagtggttatgaaattaaccacatggctaagaggta |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2955314 |
ccgcctttctgcgtcttgcgagtgtttcaggttcaataatatttgccgttttaaaataaaattacagtggttatgaaattaaccatatggctaagaggta |
2955413 |
T |
|
| Q |
136 |
tcctaaagaaagaataccttctctgcgaccataataagagatatcttcataaatgcttgtaaggtcaccgcgtcataaattcaacgtgcatccgctgatt |
235 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2955414 |
tcctaaagaaagaataccttccctgcgaccataataagagatatcttcataaatgcttgtaaggtcaccgcgtcataaattcaacgtgcatccgctgatt |
2955513 |
T |
|
| Q |
236 |
gttcacgcaacctattcctaccattgaaaccaaaaaaccgatccaatccttcagacctatgccccacaaatatgtcatgtcgtcatgcttccatagttgc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2955514 |
gttcacgcaacctattcctaccattgaaaccaaaaaaccgatccaatccttcagacctatgccccacaaatatgtcatgtcgtcatgcttccatagttgc |
2955613 |
T |
|
| Q |
336 |
attgctcaacctcgcgatctcactaaataccaagaatcccttttccctccgaagtttcttgtaagtgttgtctctttgttttcttgtaaatcttgagctg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2955614 |
attgctcaacctcgcgatctcactaaataccaagaatcccttttccctccgaagtttcttgtaagtgttgtctctttgttttcttgtaaatcttgagctg |
2955713 |
T |
|
| Q |
436 |
agtatatatactggaatttcaaatggtccaatggtatgaattccttgtataattaagaccgtcaagataatgtcgtgcataacctgctctattttgcagg |
535 |
Q |
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| T |
2955714 |
agtatatatactggaatttcaaatggtccaatggtatgaattccttgtataattaagaccgtcgagataatgtcgtgcataacctgctctattttgcagg |
2955813 |
T |
|
| Q |
536 |
agttttcgcgcataacatgtatt |
558 |
Q |
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| T |
2955814 |
agttttcgcgcataacatgtatt |
2955836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 556 - 872
Target Start/End: Original strand, 2955927 - 2956245
Alignment:
| Q |
556 |
attcctcaaatacattttcttctattagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
655 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2955927 |
attcctcaaatacattttcttctactagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
2956026 |
T |
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| Q |
656 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatcttgatga |
755 |
Q |
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| T |
2956027 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatctagatga |
2956126 |
T |
|
| Q |
756 |
aatggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
855 |
Q |
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| T |
2956127 |
aacggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
2956226 |
T |
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| Q |
856 |
tatctgt--gaaccgatag |
872 |
Q |
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||||||| |||||||||| |
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| T |
2956227 |
tatctgttggaaccgatag |
2956245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 19109516 - 19109461
Alignment:
| Q |
36 |
ccgcctttctgcgtcttgcgagtgtttcaggttcaataatatttgccgtttcaaaa |
91 |
Q |
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| T |
19109516 |
ccgcctctttgcgtcttgcgagagtttcggtttcaataatatttgccgtttcaaaa |
19109461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 9147621 - 9147568
Alignment:
| Q |
43 |
tctgcgtcttgcgagtgtttcaggttcaataatatttgccgtttcaaaataaaa |
96 |
Q |
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| T |
9147621 |
tctgcatcttgcgagagtttcggtttaaataatatttgccgtttcaaaaaaaaa |
9147568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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