View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506-Insertion-3 (Length: 674)
Name: NF4506-Insertion-3
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 361 - 650
Target Start/End: Complemental strand, 49823804 - 49823510
Alignment:
| Q |
361 |
tatttacaatagtttgttattagtaaagtttatatgcccaccgtaatagcttttgccaaaatggagtttgatatactttgtttggaaccaataccgtaat |
460 |
Q |
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| T |
49823804 |
tatttacaatagtttgttattagtaaagtttatacgcccaccgtaatagcttttgccaaaatggagtttgatatgctttgtttggaaccaataccgtaat |
49823705 |
T |
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| Q |
461 |
ttagagaataaggaagaatggtactgttgattaattctcctctcttaaattgatttgatgctttttcgaatttaagtaaagtgaatgtatattgatgcaa |
560 |
Q |
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| T |
49823704 |
ttagagaataaggaagaatgatactgttgattaattctcctctcttaaattgatttgatgctttttcaaatttaagtaaagtgaatgtatattgatgcaa |
49823605 |
T |
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| Q |
561 |
gta--tatactgtttccctttcttccctttctgat---tagtagaaaaggacttgaaattgattatgccattgttgtttatcgagaatctatata |
650 |
Q |
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| T |
49823604 |
gtatatatactgtttccctttcttccctttctgattagtagtagaaaaggacttgaaattgattatgccattgttgtttatcgagaatctatata |
49823510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 49824180 - 49823827
Alignment:
| Q |
8 |
attaagacttcgaaagtttaaaaaacccatgtcagttgactatgcctttgttcgtctgtcttgcatctaattgagtattgttgattcagacatagtttaa |
107 |
Q |
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| T |
49824180 |
attaagacttcgaaagtttaaaaatcccatgtcagttgactatgcctttgtttgtctgccttgcatctaattgagtattgttgattcagacatagtttaa |
49824081 |
T |
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| Q |
108 |
gaagtagtgtcaacttatgctttttgtgtatcgtggattggagctccttcttttatttcccatgatgtactttaatttttctggaatcgtaatgaattag |
207 |
Q |
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| T |
49824080 |
g---tagtgtcaacttgtgctttttgtgtatcgtggattgaagctcctccttttattttcgatgatgtactttaatttttctggaatcgtaatgaattag |
49823984 |
T |
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| Q |
208 |
ccgcactaatcagattctaag---gnnnnnnnnattcggaaccaaaaccgcgatttagacatcaagtataaatgttattaaaaagtgcaactatcttata |
304 |
Q |
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| T |
49823983 |
ccacactaatcaaattctaagttttttttttttatttggaaccaaaaccgcaatttagacatcaagtataaatgttattaaaaagtgcaactatcttata |
49823884 |
T |
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| Q |
305 |
ttgagatgatttaatctataattggtttggttaaagtgatttaaagatctgtaggat |
361 |
Q |
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| T |
49823883 |
ttgagatgatttgatccataattggtttggttaaagtgatttaaagatctgtaggat |
49823827 |
T |
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