View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506_high_1 (Length: 390)
Name: NF4506_high_1
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 35053224 - 35052884
Alignment:
| Q |
18 |
caccaaggactgaacaaagagtggagatgaaagagctaccnnnnnnnttgctagaaaacgtggctccattctcttaagcaattaaaatttttctttgtca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35053224 |
caccaaggactgaacaaagagtggagatgaaagagctaccaaaaaaattgctagaaaacgtggctccattctcttaagcaattaaaatttttctttgtca |
35053125 |
T |
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| Q |
118 |
attcaatccttcccttacacttatgaatctcctctgtggtttgatcaatacttaagtatggaccaagcacattaacattatatataatggaataatttgt |
217 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35053124 |
attcaatctttcccttacacttatgaatctcctctatggtttgatcaatacttaagtat-gaccaagcacattaacattatatataatggaataatttgt |
35053026 |
T |
|
| Q |
218 |
gatgttgtgtccttttacatatggtaggtgactactnnnnnnntgcacattttggaaaattataccatttcttgcatgctacacaatgttgtctttatct |
317 |
Q |
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|| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35053025 |
gaggttgtgtccttttacacatggtaggtgactact-aaaaaatgcacaatttggaaaattataccatttcttgcatgctacacaatgttgtctttatct |
35052927 |
T |
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| Q |
318 |
tttct-tttgatgtaaaccgttgctgctattttcatcagacaa |
359 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
35052926 |
tttctgtttgatgtaaaccattgctgctattttcatcagacaa |
35052884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 35069140 - 35068801
Alignment:
| Q |
18 |
caccaaggactgaacaaagagtggagatgaaagagctaccnnnnnnnttgctagaaaacgtggctccattctcttaagcaattaaaatttttctttgtca |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
35069140 |
caccaaggactgaacaaagagtggaaatgaaagagctaccaaaaaaattgctagaaaacgtggctccattctcttaagcaattgaattttttct--gtca |
35069043 |
T |
|
| Q |
118 |
attcaatccttcccttacacttatgaatctcctctgtggtttgatcaatacttaagtatggaccaagcacattaacattatatataatggaataatttgt |
217 |
Q |
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|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35069042 |
attcaatccttcccttacacttattaatctcctctatagtttgatcaatacttaagtatggaccaagcacattaacattatatataatggaataatttgt |
35068943 |
T |
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| Q |
218 |
gatgttgtgtccttttacatatggtaggtgactactnnnnnnntgcacattttggaaaattataccatttcttgcatgctacacaatgttgtctttatct |
317 |
Q |
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|||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068942 |
gatgctgtgtccttttacacatggtaggtgactactaaaaaaatgcacaatttggaaaattataccatttcttgcatgctacacaatgttgtctttatct |
35068843 |
T |
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| Q |
318 |
tttcttttgatgtaaaccgttgctgctattttcatcagacaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068842 |
tttcttttgatgtaaaccgttgctgctattttcatcagacaa |
35068801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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