View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506_high_3 (Length: 292)
Name: NF4506_high_3
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 38179788 - 38179523
Alignment:
| Q |
9 |
gagatgaaaaagttatgcaacaaaaagaagaggagggtgatagcgatgagttaagttgtagagaggaacttgagaggaatgttaatgggaagatagtgaa |
108 |
Q |
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| T |
38179788 |
gagatgaaaaagttatgcaacaaaaagaagaggagggtgatagtgatgagttaagttgtagagaggagcttgagaggaatgttaatgggaagatagtgaa |
38179689 |
T |
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| Q |
109 |
atggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggtttaggggtt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38179688 |
atggtgtagtcaggtggaggttttgtcgcaccgttctttaggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggttcaggggtt |
38179589 |
T |
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| Q |
209 |
cctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
274 |
Q |
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| T |
38179588 |
cctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
38179523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 38184457 - 38184192
Alignment:
| Q |
9 |
gagatgaaaaagttatgcaacaaaaagaagaggagggtgatagcgatgagttaagttgtagagaggaacttgagaggaatgttaatgggaagatagtgaa |
108 |
Q |
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| T |
38184457 |
gagatgaaaaagttatgcaacaaaaagaagaggagggtgatagtgatgagttaagttgtagagaggaacttgagaggaatgttaatgggaagatagtgaa |
38184358 |
T |
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| Q |
109 |
atggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggtttaggggtt |
208 |
Q |
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| T |
38184357 |
atggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggtt |
38184258 |
T |
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| Q |
209 |
cctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
274 |
Q |
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| T |
38184257 |
cctatggtagcatttccccagtggacagatcaaactactaatgcaaagttaattgaagatttgtgg |
38184192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 38169957 - 38169709
Alignment:
| Q |
26 |
caacaaaaagaagaggagggtgatagcgatgagttaagttgtagagaggaacttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtgg |
125 |
Q |
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| T |
38169957 |
caacaaaaagaagaagaagttgatgatgatgagctgagttgtagagaggaacttgagaataatatgaatgggaagatagtaaaatggtgtagtcaggtgg |
38169858 |
T |
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| Q |
126 |
aggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttaggtttaggggttcctatggttgcatttcc |
225 |
Q |
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| T |
38169857 |
aggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcc |
38169758 |
T |
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| Q |
226 |
tcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
274 |
Q |
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| T |
38169757 |
tcagtggacagatcaaaccactaatgcgaagttaattgaagatgtgtgg |
38169709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 274
Target Start/End: Original strand, 35054056 - 35054235
Alignment:
| Q |
95 |
gggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtt |
194 |
Q |
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| T |
35054056 |
gggaagatagtgaaatggtgttctcaaatggagattctttcacatccttcattgggttgttttttgacacactgtggttggaattcaactttggaaagct |
35054155 |
T |
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| Q |
195 |
taggtttaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
274 |
Q |
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| | ||||||||||||||| || ||||| || ||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
35054156 |
tggtaaaaggggttcctatggtggcgtttccacaatggacagatcagatgactaatgcaaagttaattgaagatgtgtgg |
35054235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 274
Target Start/End: Original strand, 35060794 - 35060973
Alignment:
| Q |
95 |
gggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatgacgcattgtggatggaattcgactttggaaagtt |
194 |
Q |
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| T |
35060794 |
gggaagatagtgaagtggtgttctcaagtggaggttctttcccattcttcattgggttgttttttgactcattgtggttggaactcgactttggaaagtt |
35060893 |
T |
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| Q |
195 |
taggtttaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaattgaagatgtgtgg |
274 |
Q |
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| | | |||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| |
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| T |
35060894 |
tggtatctggggttccactagtggcatttcctcaatggactgatcaaaagactaatgcaaaactaattgaagatgtgtgg |
35060973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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