View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506_low_10 (Length: 231)
Name: NF4506_low_10
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38170154 - 38169927
Alignment:
| Q |
1 |
ttggtggtgacgttgtccgtgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactct |
100 |
Q |
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| T |
38170154 |
ttggtggtgacgttgtccgtgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactct |
38170055 |
T |
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| Q |
101 |
tgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaa |
200 |
Q |
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| T |
38170054 |
tgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaattacaacaa |
38169955 |
T |
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| Q |
201 |
caaaaagaa---gaagttgatgatgatg |
225 |
Q |
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||||||||| |||||||||||||||| |
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| T |
38169954 |
caaaaagaagaagaagttgatgatgatg |
38169927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 38179957 - 38179778
Alignment:
| Q |
12 |
gttgtccgtgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgt |
111 |
Q |
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| T |
38179957 |
gttgtcggtgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
38179858 |
T |
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| Q |
112 |
ctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaa |
191 |
Q |
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| T |
38179857 |
ccaatagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaa |
38179778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 38184636 - 38184447
Alignment:
| Q |
2 |
tggtggtgacgttgtccgtgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactctt |
101 |
Q |
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|||||||| |||||| |||||| ||| | ||| ||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
38184636 |
tggtggtggtgttgtcgatgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactctt |
38184537 |
T |
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| Q |
102 |
gctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattagagataaaaaa |
191 |
Q |
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| T |
38184536 |
gctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatgaaaaa |
38184447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 35053885 - 35053994
Alignment:
| Q |
72 |
tctgttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgt |
171 |
Q |
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||||| ||||||||||||||||||| | |||||||||| | ||||||| |||||||||||||| ||| |||||||||| ||||||| | ||||||| |
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| T |
35053885 |
tctgtggtttatgtttcatttggtagttactttgttttgtctgagagacaaagggaggaaattgcacatgctttgttggattgtggatttccattcttgt |
35053984 |
T |
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| Q |
172 |
gggttattag |
181 |
Q |
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||||| |||| |
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| T |
35053985 |
gggttcttag |
35053994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 35060641 - 35060750
Alignment:
| Q |
75 |
gttgtttatgtttcatttggtactcttgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtggg |
174 |
Q |
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|||||||||||||| ||||||| | |||||||||| | |||||| |||||||||||| |||| |||||| ||| ||| ||||| |||||||||| |
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| T |
35060641 |
gttgtttatgtttcttttggtagttactttgttttgtctgagcgacaaacagaggaaattgcaagtgcgttgttgaattgtgggttttcattcttgtggg |
35060740 |
T |
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| Q |
175 |
ttattagaga |
184 |
Q |
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| T |
35060741 |
tcatgagaga |
35060750 |
T |
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