View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4506_low_11 (Length: 221)
Name: NF4506_low_11
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27296060 - 27295852
Alignment:
| Q |
1 |
ggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27296060 |
ggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacat |
27295961 |
T |
|
| Q |
101 |
ggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatcttctctcaaagccaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27295960 |
ggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatcttctctcaaagccaaat |
27295861 |
T |
|
| Q |
201 |
aatgatgat |
209 |
Q |
| |
|
||| ||||| |
|
|
| T |
27295860 |
aattatgat |
27295852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 14738620 - 14738722
Alignment:
| Q |
8 |
taggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacatggcaggt |
107 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
14738620 |
taggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacatacacgactcaatgaatggtgttagaatcaaaacatggcaggt |
14738719 |
T |
|
| Q |
108 |
aaa |
110 |
Q |
| |
|
||| |
|
|
| T |
14738720 |
aaa |
14738722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University