View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4506_low_12 (Length: 201)

Name: NF4506_low_12
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4506_low_12
NF4506_low_12
[»] chr6 (2 HSPs)
chr6 (1-190)||(14036148-14036329)
chr6 (1-34)||(34828317-34828350)
[»] chr8 (6 HSPs)
chr8 (2-50)||(9192229-9192276)
chr8 (1-49)||(1135396-1135444)
chr8 (3-62)||(44159074-44159133)
chr8 (1-34)||(2958436-2958469)
chr8 (1-34)||(9663071-9663104)
chr8 (5-50)||(41603076-41603120)
[»] chr5 (4 HSPs)
chr5 (1-63)||(40782536-40782598)
chr5 (1-46)||(5150088-5150133)
chr5 (1-34)||(32283590-32283623)
chr5 (1-45)||(36162896-36162939)
[»] chr3 (2 HSPs)
chr3 (1-35)||(5030216-5030250)
chr3 (1-48)||(25874141-25874188)
[»] chr7 (2 HSPs)
chr7 (1-34)||(34722038-34722071)
chr7 (1-50)||(23198751-23198799)
[»] chr4 (2 HSPs)
chr4 (5-49)||(10399267-10399311)
chr4 (3-35)||(13964076-13964108)
[»] chr1 (8 HSPs)
chr1 (1-52)||(35308196-35308246)
chr1 (3-50)||(44119474-44119520)
chr1 (1-63)||(24752636-24752698)
chr1 (1-31)||(50727305-50727335)
chr1 (1-34)||(15892808-15892841)
chr1 (1-34)||(28053258-28053291)
chr1 (1-50)||(39452471-39452520)
chr1 (1-62)||(48646715-48646776)
[»] scaffold0328 (1 HSPs)
scaffold0328 (4-46)||(6993-7035)
[»] chr2 (2 HSPs)
chr2 (1-46)||(19595484-19595529)
chr2 (2-62)||(11175797-11175856)
[»] scaffold0743 (1 HSPs)
scaffold0743 (2-46)||(1424-1468)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 14036329 - 14036148
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccaccnnnnnnnnn-ttgatctaggccaccaaaaagaaaaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  14036329 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccaccaaaagaaaaattgatctaggccaccaaaaagaaaaat 14036230  T
Q  100 tgatttatttggttaggaatcaaatatataaaattattcaacattaaatacattaaattgagtaatatcctatgtttttgtttcatctcac 190  Q
    |||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||| ||||    
T  14036229 tgatttatttggtttggaatcaaatatataaaattattcaacatt---------aaattgagtaatatcctatgtttttgattcatttcac 14036148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34828317 - 34828350
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  34828317 tcagttggtatggacaatgcataataatatgtaa 34828350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 9192276 - 9192229
Alignment:
Q  2 cagttggtatgaacaatgcataataatatgtaaattctggggttcaaac 50  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  9192276 cagttggtatgaacaatgcataat-atatgtaaagtctggggttcaaac 9192229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1135444 - 1135396
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaa 49  Q
    |||||| |||||||||||||||||||||||||||  | |||||||||||    
T  1135444 tcagtttgtatgaacaatgcataataatatgtaaggtttggggttcaaa 1135396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 44159074 - 44159133
Alignment:
Q  3 agttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccac 62  Q
    ||||||||||||||||||||||| || |||||  |||||||||| ||||  |||||||||    
T  44159074 agttggtatgaacaatgcataatgatttgtaaggtctggggttcgaactccggccaccac 44159133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2958436 - 2958469
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  2958436 tcagttggtatggacaatgcataataatatgtaa 2958469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9663104 - 9663071
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  9663104 tcagttggtatggacaatgcataataatatgtaa 9663071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 41603076 - 41603120
Alignment:
Q  5 ttggtatgaacaatgcataataatatgtaaattctggggttcaaac 50  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||    
T  41603076 ttggtatgaacaatgcataat-atatgtaaggtctggggttcaaac 41603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40782598 - 40782536
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccacc 63  Q
    |||||| ||||| ||||||||||||||||||||| || ||||||||||||   ||||||||||    
T  40782598 tcagtttgtatggacaatgcataataatatgtaacttatggggttcaaaccccggccaccacc 40782536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5150133 - 5150088
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttc 46  Q
    |||||| ||||| |||||||||||||||||||||  ||||||||||    
T  5150133 tcagttagtatggacaatgcataataatatgtaaggtctggggttc 5150088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32283590 - 32283623
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  32283590 tcagttggtatggacaatgcataataatatgtaa 32283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36162939 - 36162896
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggtt 45  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  36162939 tcagttggtatgaacaatgcataat-atatgtaaggtctggggtt 36162896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5030216 - 5030250
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5030216 tcagttggtatgaacaatgcataataatatgtaaa 5030250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25874141 - 25874188
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaa 48  Q
    |||||||||||| |||||||||||||||||||||  || |||||||||    
T  25874141 tcagttggtatggacaatgcataataatatgtaaggtccggggttcaa 25874188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34722071 - 34722038
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34722071 tcagttggtatgaacaatgcataataatatgtaa 34722038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23198799 - 23198751
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaac 50  Q
    |||||||||||||||||||||||| |||||| ||| || |||||||||||    
T  23198799 tcagttggtatgaacaatgcataa-aatatgcaaagtccggggttcaaac 23198751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 10399267 - 10399311
Alignment:
Q  5 ttggtatgaacaatgcataataatatgtaaattctggggttcaaa 49  Q
    |||||||||||||| |||||||||||||||| || ||||||||||    
T  10399267 ttggtatgaacaatacataataatatgtaaagtccggggttcaaa 10399311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 13964108 - 13964076
Alignment:
Q  3 agttggtatgaacaatgcataataatatgtaaa 35  Q
    |||||||||| ||||||||||||||||||||||    
T  13964108 agttggtatggacaatgcataataatatgtaaa 13964076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35308196 - 35308246
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaactt 52  Q
    ||||||||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  35308196 tcagttggtatgaacaatgcataat-atatacaaaatctggggttcaaactt 35308246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 44119520 - 44119474
Alignment:
Q  3 agttggtatgaacaatgcataataatatgtaaattctggggttcaaac 50  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  44119520 agttggtatgaacaatacataata-tatgtaagttctggggttcaaac 44119474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24752698 - 24752636
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccacc 63  Q
    |||||||||||| |||||||||||||||||| ||  |||||||||| |||   ||||||||||    
T  24752698 tcagttggtatggacaatgcataataatatgcaaggtctggggttcgaaccccggccaccacc 24752636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50727305 - 50727335
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatg 31  Q
    |||||||||||||||||||||||||||||||    
T  50727305 tcagttggtatgaacaatgcataataatatg 50727335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15892808 - 15892841
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15892808 tcagttggtatgaacaatgcataaaaatatgtaa 15892841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28053291 - 28053258
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  28053291 tcagttggtatggacaatgcataataatatgtaa 28053258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39452471 - 39452520
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaac 50  Q
    |||||||||||||||||||||||| |||||| ||  |||||| |||||||    
T  39452471 tcagttggtatgaacaatgcataaaaatatgcaaggtctgggattcaaac 39452520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48646776 - 48646715
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccac 62  Q
    |||||| ||||| |||||||||||||||||| ||  || ||||||||||||  |||||||||    
T  48646776 tcagtttgtatggacaatgcataataatatgcaaggtccggggttcaaactccggccaccac 48646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 6993 - 7035
Alignment:
Q  4 gttggtatgaacaatgcataataatatgtaaattctggggttc 46  Q
    ||||||||| |||||||||||||||||||||  ||||||||||    
T  6993 gttggtatggacaatgcataataatatgtaaggtctggggttc 7035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19595529 - 19595484
Alignment:
Q  1 tcagttggtatgaacaatgcataataatatgtaaattctggggttc 46  Q
    ||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  19595529 tcagttggtatgaaccatgcataataatatgcaaggtctggggttc 19595484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 11175797 - 11175856
Alignment:
Q  2 cagttggtatgaacaatgcataataatatgtaaattctggggttcaaacttaggccaccac 62  Q
    ||||||||||| |||||||||||| ||||| ||  |||||||||||||||  |||||||||    
T  11175797 cagttggtatggacaatgcataat-atatgcaagatctggggttcaaactccggccaccac 11175856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1468 - 1424
Alignment:
Q  2 cagttggtatgaacaatgcataataatatgtaaattctggggttc 46  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||    
T  1468 cagttggtatggacaatgcataataatatgcaacgtctggggttc 1424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University