View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506_low_7 (Length: 245)
Name: NF4506_low_7
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39417778 - 39417534
Alignment:
| Q |
1 |
ttttagtttttatattttctctaatttgtttagtactagtacttttaattggttactacatttcttagaagcttttaaaaacttgtcacattgagtagtt |
100 |
Q |
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| T |
39417778 |
ttttagtttttatattttctctaatttggttagtactagtacttttaattggttactacatttcttagaagcttttaaaaacttgtcacattgagtagtt |
39417679 |
T |
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| Q |
101 |
ttcattgtggcaatgcttctatatttatgttaaatgttaaactatgtatgattggggaaattatcaagtgatgttaaaattatcgagaagttaaaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39417678 |
ttcattgtggcaatgcttctatatttatgttaaatgttaaactatgtatgattggggaaattatcaagtgatgttaaaattatcgagaagttaaaagttc |
39417579 |
T |
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| Q |
201 |
aatgcaaaagtgtttaatttagttttgcttgttatctgtgctgct |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39417578 |
aatgcaaaagtgtttaatttagttttgcttgttatttgtgttgct |
39417534 |
T |
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