View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4506_low_8 (Length: 239)
Name: NF4506_low_8
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38170245 - 38170466
Alignment:
| Q |
1 |
tattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgttttcttcattcaacaactgaatttgctctttgagagatggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38170245 |
tattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttcattcaacaactgaatttgctctttgagagatggaag |
38170344 |
T |
|
| Q |
101 |
agcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattgaacacgtttcatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38170345 |
agcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcc |
38170444 |
T |
|
| Q |
201 |
tttgatttgtttgtgatgtagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38170445 |
tttgatttgtttgtgatgtagt |
38170466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 38184744 - 38184949
Alignment:
| Q |
17 |
ttcaaactcctcaacggtgttcacaagtactcttgggttgttttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgt |
115 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||| ||| | |
|
|
| T |
38184744 |
ttcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcat-ctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatat |
38184842 |
T |
|
| Q |
116 |
atttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattgaacacgtttcatcctttgatttgtttgtg |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38184843 |
atttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtg |
38184942 |
T |
|
| Q |
216 |
atgtagt |
222 |
Q |
| |
|
||||||| |
|
|
| T |
38184943 |
atgtagt |
38184949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 38180075 - 38180280
Alignment:
| Q |
17 |
ttcaaactcctcaacggtgttcacaagtactcttgggttgttttcttcattcaacaactgaatttgctctttgagagatggaagagcaaaagtgtatgta |
116 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | | |||||||| ||||||| |||| || ||| | ||||||| || |
|
|
| T |
38180075 |
ttcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatata |
38180174 |
T |
|
| Q |
117 |
tttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattgaacacgtttcatcctttgatttgtttgtga |
216 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38180175 |
tttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtga |
38180274 |
T |
|
| Q |
217 |
tgtagt |
222 |
Q |
| |
|
||||| |
|
|
| T |
38180275 |
cgtagt |
38180280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University