View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4506_low_9 (Length: 235)
Name: NF4506_low_9
Description: NF4506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4506_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 4695041 - 4694982
Alignment:
| Q |
169 |
gcaacaatggatcgcacacaaatgcttctggttggtttaccactcttcctattcatctca |
228 |
Q |
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| T |
4695041 |
gcaacaatggatcgcacacaaatccttctggttggtttaccactcttcctattcttctca |
4694982 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 4695186 - 4695121
Alignment:
| Q |
18 |
aaaagattaacaaggcaaatagatatcgaacgaaataag----tactcaaatccaaagttattagc |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4695186 |
aaaagattaacaaggcaaatagatatcgaacgaaataagtatttactcaaatccaaagttattagc |
4695121 |
T |
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