View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4507-Insertion-1 (Length: 766)
Name: NF4507-Insertion-1
Description: NF4507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4507-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 197 - 766
Target Start/End: Original strand, 43926724 - 43927293
Alignment:
| Q |
197 |
cttcaaacgagctagttttccatctttttagtaaaatggcattgaacctttgtttatagttagataacctttcacttaaataaatttgtttatgcaagta |
296 |
Q |
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| T |
43926724 |
cttcaaacgagctagttttccatctttttagtaaaatggcattgaacctttgtttatagttagataaccttccacttaaataaatttgtttatgcaaata |
43926823 |
T |
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| Q |
297 |
tactagtaaattacgactatttttataagattacttataaattaagagcgtaaattgagcgttaaatcatgaggcaaattttagttgaactttcaagtta |
396 |
Q |
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| T |
43926824 |
tactagtaaattacgactatttttataagattacttataaattaagagc-----------gttaaatcatgaggcaaattttagttgaactttcaagtta |
43926912 |
T |
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| Q |
397 |
caccaaagcaaagcaaccaatggcaattatctctaacgtacctttaactctcgagatttaattttgtgaaaggttccaacgtcaataataggatacttgc |
496 |
Q |
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| T |
43926913 |
caccaaagcaaagcaaccaatggcaattatctctaacgtacctttaactctcgagatttaattttgtgaaaggttccaacgtcaataataggatacttgc |
43927012 |
T |
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| Q |
497 |
cgtacttgaccttcatataaaagggaccctcactaggcctaccaaccccataattcgtgacatccccgtaaaccattttactaagcatcaccatcactga |
596 |
Q |
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| T |
43927013 |
cgtacttgaccttcatataaaagggaccctcactaggcctaccaaccccataattcgtgacatccccgtaaaccattttactaagcatcaccatcactga |
43927112 |
T |
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| Q |
597 |
atccaccatctccattgacaaatacttcatcagaaacaaccccaaattcaccatgccccttgacaaaatgtgaacctgcatgcaca-----------ttg |
685 |
Q |
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| T |
43927113 |
atccaccatctccattgacaaatacttcatcagaaacaaccccaaattcaccatgccccttgacaaaatgtgaacctgcatgcacattgcattcactttg |
43927212 |
T |
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| Q |
686 |
ttatatctgagcgtgacaggcaaactaattaatagcaatagtttaaccaaagttacataatcaatcacaatcatatactga |
766 |
Q |
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| T |
43927213 |
ttatatctgagcgtgacaggcaaactaattaatagcaatagtttaaccaaagttacataatcaatcacaatcatatactga |
43927293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 43926535 - 43926680
Alignment:
| Q |
8 |
attcttcccacttacgcattctatttccgctggtaaaacctaacgtaacacacaacacaatgtccattcgtcacgtcacaacaacaaacaaagctaccgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43926535 |
attcttcccacttacgcattctatttccgctggtaaaacctaacgtaacacacaacacaatgtccattcgtcacgtcacaacaacaaacaaagctaccgc |
43926634 |
T |
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| Q |
108 |
aattatatttttgcacttttcattcatgtactaactcaatatgtga |
153 |
Q |
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| T |
43926635 |
aattatatttttgcacttttcattcatgtactaactcaatatgtga |
43926680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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