View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4507-Insertion-2 (Length: 765)

Name: NF4507-Insertion-2
Description: NF4507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4507-Insertion-2
NF4507-Insertion-2
[»] chr4 (41 HSPs)
chr4 (8-765)||(39051069-39051827)
chr4 (463-729)||(55264399-55264676)
chr4 (484-596)||(49448181-49448295)
chr4 (456-513)||(13119375-13119432)
chr4 (684-729)||(13302236-13302281)
chr4 (630-726)||(54090997-54091100)
chr4 (429-513)||(55264397-55264482)
chr4 (554-727)||(44137393-44137573)
chr4 (496-568)||(53924452-53924526)
chr4 (496-596)||(54458704-54458806)
chr4 (490-544)||(45921828-45921882)
chr4 (547-596)||(13119231-13119280)
chr4 (684-729)||(13432688-13432733)
chr4 (460-513)||(21782168-21782221)
chr4 (460-514)||(7402991-7403045)
chr4 (467-513)||(13119230-13119276)
chr4 (484-526)||(49448149-49448191)
chr4 (461-596)||(54090928-54091065)
chr4 (457-534)||(11383005-11383081)
chr4 (547-596)||(13119371-13119420)
chr4 (547-596)||(21782176-21782225)
chr4 (468-513)||(39051239-39051284)
chr4 (685-729)||(39493626-39493670)
chr4 (457-513)||(40942669-40942725)
chr4 (8-87)||(51407779-51407859)
chr4 (469-513)||(55264542-55264586)
chr4 (459-514)||(7403253-7403308)
chr4 (684-748)||(13302114-13302184)
chr4 (599-674)||(49448196-49448271)
chr4 (599-674)||(53924448-53924523)
chr4 (599-674)||(54458707-54458782)
chr4 (461-507)||(5162867-5162913)
chr4 (458-512)||(33614379-33614433)
chr4 (465-511)||(40942618-40942664)
chr4 (459-513)||(44137420-44137474)
chr4 (546-596)||(44137429-44137479)
chr4 (550-596)||(55264625-55264671)
chr4 (680-729)||(13432781-13432830)
chr4 (551-596)||(39051322-39051367)
chr4 (54-87)||(52721869-52721902)
chr4 (463-536)||(55284022-55284095)
[»] chr2 (20 HSPs)
chr2 (465-727)||(32502849-32503121)
chr2 (496-674)||(8033614-8033794)
chr2 (498-723)||(17658784-17659019)
chr2 (459-670)||(8033720-8033926)
chr2 (459-596)||(22191422-22191562)
chr2 (675-728)||(22191537-22191590)
chr2 (467-596)||(6511057-6511188)
chr2 (461-520)||(39760176-39760235)
chr2 (459-513)||(33940031-33940085)
chr2 (461-513)||(17658809-17658861)
chr2 (457-513)||(32013973-32014028)
chr2 (461-513)||(32503040-32503092)
chr2 (496-610)||(8033575-8033692)
chr2 (628-674)||(22191446-22191492)
chr2 (550-596)||(39760183-39760229)
chr2 (637-730)||(39760359-39760459)
chr2 (547-596)||(33940027-33940076)
chr2 (466-513)||(22191420-22191467)
chr2 (469-515)||(33939958-33940004)
chr2 (469-515)||(39760286-39760332)
[»] chr3 (37 HSPs)
chr3 (459-674)||(20124074-20124292)
chr3 (498-727)||(47337143-47337374)
chr3 (461-730)||(33428919-33429197)
chr3 (460-537)||(38181382-38181459)
chr3 (571-696)||(1163420-1163553)
chr3 (496-596)||(20124050-20124152)
chr3 (461-544)||(29504802-29504885)
chr3 (599-748)||(40472813-40472969)
chr3 (460-568)||(28860558-28860668)
chr3 (581-729)||(16298194-16298350)
chr3 (459-513)||(55447176-55447230)
chr3 (599-668)||(11413150-11413219)
chr3 (471-567)||(11413149-11413247)
chr3 (649-729)||(40860947-40861028)
chr3 (631-718)||(29504872-29504966)
chr3 (461-513)||(33429113-33429165)
chr3 (459-511)||(39840690-39840742)
chr3 (424-513)||(33075263-33075353)
chr3 (636-729)||(39840661-39840760)
chr3 (459-513)||(48338342-48338396)
chr3 (550-596)||(55447175-55447221)
chr3 (457-513)||(1163414-1163470)
chr3 (458-514)||(27812296-27812352)
chr3 (461-513)||(42045804-42045856)
chr3 (619-729)||(33075229-33075346)
chr3 (459-514)||(45965797-45965852)
chr3 (496-568)||(47337242-47337316)
chr3 (469-596)||(48338351-48338482)
chr3 (552-674)||(48338439-48338561)
chr3 (674-729)||(49547724-49547779)
chr3 (458-513)||(55446976-55447031)
chr3 (463-537)||(40472931-40473005)
chr3 (675-729)||(45965675-45965729)
chr3 (546-595)||(41709199-41709248)
chr3 (447-568)||(45965691-45965815)
chr3 (674-727)||(45965826-45965879)
chr3 (54-87)||(52684842-52684875)
[»] chr8 (19 HSPs)
chr8 (465-646)||(29490409-29490595)
chr8 (599-730)||(33229496-33229628)
chr8 (460-568)||(33229557-33229667)
chr8 (550-725)||(32029411-32029594)
chr8 (675-729)||(5840355-5840409)
chr8 (459-596)||(21136618-21136757)
chr8 (672-727)||(29490376-29490431)
chr8 (599-723)||(41687771-41687897)
chr8 (460-537)||(10028775-10028852)
chr8 (466-564)||(23961584-23961684)
chr8 (496-730)||(41424409-41424661)
chr8 (493-596)||(29490540-29490645)
chr8 (462-514)||(21136711-21136763)
chr8 (675-722)||(21136596-21136643)
chr8 (675-729)||(10028897-10028951)
chr8 (54-87)||(6443338-6443371)
chr8 (599-668)||(29490443-29490512)
chr8 (469-594)||(32029548-32029676)
chr8 (459-512)||(32029634-32029687)
[»] chr5 (30 HSPs)
chr5 (460-729)||(39643020-39643299)
chr5 (461-618)||(9900231-9900391)
chr5 (464-566)||(33391453-33391557)
chr5 (461-725)||(36184522-36184782)
chr5 (447-543)||(4902204-4902300)
chr5 (488-596)||(31066010-31066121)
chr5 (457-601)||(8285055-8285201)
chr5 (639-715)||(8285218-8285301)
chr5 (461-513)||(31065879-31065931)
chr5 (445-544)||(3620904-3621003)
chr5 (457-596)||(5971789-5971930)
chr5 (460-513)||(31066075-31066129)
chr5 (460-513)||(5971885-5971938)
chr5 (630-713)||(1862345-1862429)
chr5 (599-675)||(9900269-9900345)
chr5 (460-511)||(8840016-8840067)
chr5 (449-518)||(33676560-33676631)
chr5 (459-513)||(8285232-8285286)
chr5 (456-513)||(39643046-39643103)
chr5 (471-515)||(9637747-9637791)
chr5 (457-513)||(27354517-27354573)
chr5 (548-596)||(31065886-31065934)
chr5 (488-536)||(33090674-33090722)
chr5 (458-513)||(9637651-9637706)
chr5 (675-730)||(20399029-20399084)
chr5 (547-594)||(27354513-27354560)
chr5 (460-513)||(31046134-31046188)
chr5 (459-513)||(31050998-31051052)
chr5 (599-718)||(4902256-4902377)
chr5 (547-596)||(8285228-8285277)
[»] chr1 (32 HSPs)
chr1 (461-624)||(845021-845187)
chr1 (465-715)||(15395209-15395471)
chr1 (442-549)||(38783905-38784013)
chr1 (447-543)||(7790375-7790471)
chr1 (424-596)||(10595411-10595585)
chr1 (461-595)||(34835629-34835764)
chr1 (630-729)||(40649779-40649885)
chr1 (675-730)||(38783893-38783948)
chr1 (471-659)||(23399571-23399758)
chr1 (469-596)||(40649817-40649946)
chr1 (465-514)||(6219662-6219711)
chr1 (459-536)||(27293311-27293388)
chr1 (602-666)||(845062-845126)
chr1 (457-513)||(15395222-15395278)
chr1 (599-675)||(30570167-30570243)
chr1 (471-568)||(30570172-30570270)
chr1 (599-674)||(7790344-7790419)
chr1 (457-504)||(46410826-46410873)
chr1 (459-509)||(4066936-4066986)
chr1 (684-730)||(38576575-38576621)
chr1 (547-597)||(46410814-46410863)
chr1 (599-655)||(12951699-12951755)
chr1 (496-544)||(12951710-12951758)
chr1 (447-513)||(1818377-1818444)
chr1 (545-596)||(7790399-7790450)
chr1 (675-729)||(10377569-10377623)
chr1 (34-88)||(15115628-15115682)
chr1 (34-88)||(15140144-15140198)
chr1 (546-596)||(17347223-17347273)
chr1 (675-729)||(28504713-28504767)
chr1 (551-664)||(40649902-40650016)
chr1 (546-596)||(46410685-46410735)
[»] chr7 (25 HSPs)
chr7 (599-730)||(10524983-10525115)
chr7 (458-596)||(12427863-12428003)
chr7 (447-537)||(32296396-32296486)
chr7 (460-513)||(42709949-42710002)
chr7 (445-514)||(41008915-41008985)
chr7 (496-568)||(10524980-10525054)
chr7 (599-674)||(32296359-32296434)
chr7 (551-615)||(42710041-42710106)
chr7 (487-564)||(16953226-16953305)
chr7 (460-544)||(30935240-30935324)
chr7 (468-596)||(42709957-42710086)
chr7 (11-85)||(5893369-5893444)
chr7 (687-730)||(16808055-16808098)
chr7 (673-724)||(41008801-41008852)
chr7 (675-729)||(12427835-12427889)
chr7 (576-696)||(33384106-33384233)
chr7 (463-544)||(35660930-35661011)
chr7 (461-513)||(33384104-33384156)
chr7 (548-603)||(6017-6072)
chr7 (675-729)||(43669488-43669540)
chr7 (507-546)||(47589490-47589529)
chr7 (460-517)||(5964225-5964282)
chr7 (684-729)||(16810450-16810495)
chr7 (547-596)||(33384111-33384160)
chr7 (54-87)||(47718841-47718874)
[»] chr6 (27 HSPs)
chr6 (419-729)||(21394256-21394578)
chr6 (443-668)||(32519993-32520227)
chr6 (460-596)||(5656490-5656625)
chr6 (459-513)||(21969174-21969228)
chr6 (461-537)||(17437699-17437776)
chr6 (578-730)||(8592162-8592320)
chr6 (442-537)||(19121955-19122051)
chr6 (470-534)||(26330227-26330291)
chr6 (500-568)||(23765853-23765923)
chr6 (457-543)||(3960816-3960902)
chr6 (599-659)||(17437677-17437737)
chr6 (488-596)||(17333334-17333442)
chr6 (34-87)||(13032358-13032411)
chr6 (673-730)||(19122006-19122063)
chr6 (547-596)||(21969183-21969232)
chr6 (674-727)||(26330338-26330391)
chr6 (601-674)||(32520096-32520169)
chr6 (461-514)||(32942389-32942442)
chr6 (599-675)||(20832519-20832595)
chr6 (599-674)||(3889973-3890048)
chr6 (675-722)||(16710444-16710491)
chr6 (458-513)||(17437555-17437610)
chr6 (636-730)||(21969251-21969352)
chr6 (463-513)||(8446978-8447028)
chr6 (463-513)||(8455782-8455832)
chr6 (461-514)||(3890026-3890079)
chr6 (54-87)||(32018611-32018644)
[»] scaffold0050 (3 HSPs)
scaffold0050 (410-646)||(81947-82178)
scaffold0050 (496-568)||(82128-82205)
scaffold0050 (684-727)||(81970-82013)
[»] scaffold0154 (3 HSPs)
scaffold0154 (551-659)||(6064-6173)
scaffold0154 (649-727)||(6210-6295)
scaffold0154 (477-596)||(6137-6259)
[»] scaffold0340 (3 HSPs)
scaffold0340 (465-596)||(10910-11043)
scaffold0340 (465-513)||(10998-11046)
scaffold0340 (673-730)||(10874-10931)
[»] scaffold0360 (1 HSPs)
scaffold0360 (675-729)||(4796-4850)
[»] scaffold0198 (3 HSPs)
scaffold0198 (683-729)||(11542-11588)
scaffold0198 (683-729)||(11907-11953)
scaffold0198 (461-568)||(12110-12219)
[»] scaffold0140 (1 HSPs)
scaffold0140 (467-533)||(7561-7628)
[»] scaffold0066 (2 HSPs)
scaffold0066 (672-727)||(11992-12047)
scaffold0066 (626-727)||(12080-12186)
[»] scaffold0528 (1 HSPs)
scaffold0528 (459-513)||(1889-1943)


Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 765
Target Start/End: Complemental strand, 39051827 - 39051069
Alignment:
Q  8 tttctttgtatgttctattttgcgactcctaatctaatattttttctgctggttaggatccattgtgattttaataaattctgtttt-acttcttaaaat 106  Q
    |||||||||||||||||||||| ||||| |||||||| |||  || |||||||||| || |||||||||||||||||||||  |||| ||||||||||||    
T  39051827 tttctttgtatgttctattttgtgactcataatctaacattccttgtgctggttagaattcattgtgattttaataaattccatttttacttcttaaaat 39051728  T
Q  107 cnnnnnnntaa-ttgcattgtaaagatttagaattttattcgccaagatttgctaaaattgtaaaaatgcttcttaaattgaactgtgtctatcaaaata 205  Q
    |        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051727 caaaaagaaaaattgcattgtaaagatttagaattttattcgccaagatttgctaaaattgtaaaaatgcttcttaaattgaactgtgtctatcaaaata 39051628  T
Q  206 gtaaatccatttatttttccattggagtggatgaagtgatatgtgaaccgcttacgtgacaatctactatatgttaatgcaatattagtatattacgtaa 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  39051627 gtaaatccatttatttttccattagagtggatgaagtgatatgtgaaccgcttacgtgacaatctactat--gttaatgcaatattagtatattacgtaa 39051530  T
Q  306 ccattttgtccaaaataattttagagttcatccaacattagtcctctttctctttttctt--ctcaatctccctcccttctaatcctcttcnnnnnnnnn 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  ||||||||||||||||||||||||             
T  39051529 ccattttgtccaaaataattttagagttcatccaacattagtcctctttctctttctcttttctctctctccctcccttctaatcctcttcttttttttt 39051430  T
Q  404 nnnaggaaaccatcgatttagtctatgtctttataacacactttcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagt 503  Q
       ||||||||||||||||||||| |||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39051429 t--aggaaaccatcgatttagtctctgtctttataaatcacttttaaattagttatgactctattaatattttaaaatagtcactgtctttgtcaaaagt 39051332  T
Q  504 ttctcaattagatcattgtctttatgtttttgtcgcatgacaagacttaattgagaaacttttgatcaagacagagactattttgaaatattatcaaagt 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051331 ttctcaattagatcattgtctttatgtttttgtcgcatgacaagacttaattgagaaacttttgatcaagacagagactattttgaaatattatcaaagt 39051232  T
Q  604 ttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaatcaag 702  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  39051231 ttctcaactagatctctgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaagactattttaaaatattaatagaatcaat 39051132  T
Q  703 gactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttc 765  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051131 gactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttc 39051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 463 - 729
Target Start/End: Complemental strand, 55264676 - 55264399
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaa 560  Q
    ||||||||||||| |||| ||||  ||||||| ||||||||||||||||||  ||   |||| |||||||||||| ||||   |  ||||||||||||||    
T  55264676 tctattaatatttcaaaagagtctgtgtctttgtcaaaagtttctcaattaattccccgtctctatgtttttgtcacatggatatggacttaattgagaa 55264577  T
Q  561 acttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactaga--tctttgtctatatatttttgtcacatgacgagtgacttaatt 657  Q
    ||||||||  ||||||  ||||||||||||||||| || |||||||||||| ||||  ||||| ||| | | ||||||||||||||  || || ||||||    
T  55264576 acttttgacaaagacattgactattttgaaatattgtcaaaagtttctcaattagacttctttctct-tctttttttgtcacatgataagagatttaatt 55264478  T
Q  658 gagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    || |||||||| |||||       |||||||| ||||||||||||| |||  |||||| |||| ||||||||| |||||    
T  55264477 gaaaaacttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaaattgaaagtgacttataaaga 55264399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 484 - 596
Target Start/End: Original strand, 49448181 - 49448295
Alignment:
Q  484 tcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttgatcaagacagagac 581  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||| |  ||  ||||||| ||||||||||  |||||| ||||    
T  49448181 tcactgtctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaaagac 49448280  T
Q  582 tattttgaaatatta 596  Q
    || ||||||||||||    
T  49448281 tagtttgaaatatta 49448295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 13119432 - 13119375
Alignment:
Q  456 ttatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||    
T  13119432 ttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttctcaatta 13119375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 684 - 729
Target Start/End: Original strand, 13302236 - 13302281
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  13302236 aaatattaatagaatcgaggactaatttgagagtgacttacaaaga 13302281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 726
Target Start/End: Original strand, 54090997 - 54091100
Alignment:
Q  630 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgactt 722  Q
    |||||||||||||||||| ||| |||||||||||||||  |||||       |||| |||||||||||||| || |||| ||||||||||||| ||||||    
T  54090997 tttttgtcacatgacgagggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaatgactt 54091096  T
Q  723 acaa 726  Q
    ||||    
T  54091097 acaa 54091100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 513
Target Start/End: Original strand, 55264397 - 55264482
Alignment:
Q  429 tgtctttataacacactttcaaattaatta-tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||  ||||||||| ||| | | ||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||    
T  55264397 tgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagtttttcaatta 55264482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 727
Target Start/End: Complemental strand, 44137573 - 44137393
Alignment:
Q  554 ttgagaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgact 652  Q
    |||||||||||||||  ||| || | |||||||||||||||| || |||||||||||| ||||  | ||| | ||| ||||| ||||| || ||| ||||    
T  44137573 ttgagaaacttttgacaaaggcataaactattttgaaatattgtcaaaagtttctcaattagacttatgtttctatgttttt-tcacacgatgagagact 44137475  T
Q  653 taattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||| ||| |||| |||||       |||||||| ||||||||||||| |||  ||||||||||||| | |||||||||    
T  44137474 taattgataaatttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaa 44137393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 53924526 - 53924452
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaattgagaaacttttga 568  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||   ||  || ||||||||||||||||||    
T  53924526 tcaaaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttga 53924452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 596
Target Start/End: Original strand, 54458704 - 54458806
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttgatcaagacagagactattttgaaata 593  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||| || |  ||| |||| |||| ||||||||  |||||||| | || |||||||||    
T  54458704 tcaaaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaagacagatattagtttgaaata 54458803  T
Q  594 tta 596  Q
    |||    
T  54458804 tta 54458806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 45921882 - 45921828
Alignment:
Q  490 tctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  45921882 tctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcacatgac 45921828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 13119280 - 13119231
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  13119280 gacttaattgagaaacttttgacaaagacagcgactattttgaaatatta 13119231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 729
Target Start/End: Complemental strand, 13432733 - 13432688
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  13432733 aaatattaatagaatcgaggactaatttgagagttacttacaaaga 13432688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 21782168 - 21782221
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||| ||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  21782168 gactatattaatatttcaaaatagtcactctctttatcaaaagtttttcaatta 21782221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 7402991 - 7403045
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||||||||||| ||||| || ||||||||||| |||| ||||||||    
T  7402991 gactctattaatattttaaattagtctctttctttatcaaatgtttttcaattag 7403045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 513
Target Start/End: Original strand, 13119230 - 13119276
Alignment:
Q  467 ttaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttctcaatta 13119276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 526
Target Start/End: Original strand, 49448149 - 49448191
Alignment:
Q  484 tcactgtctttatcaaaagtttctcaattagatcattgtcttt 526  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  49448149 tcactgtctttgtcaaaagtttctcaattagatcactgtcttt 49448191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 596
Target Start/End: Original strand, 54090928 - 54091065
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgag 558  Q
    ||||| ||||||||| ||| |||||  ||||||| || ||| ||||||||| |||||   ||| ||||||||||||| |||||| |  ||| ||||||||    
T  54090928 actctgttaatatttcaaactagtctatgtctttgtcgaaactttctcaataagatccaggtcattatgtttttgtcacatgacgagggacctaattgag 54091027  T
Q  559 aaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||| ||  |||||| | |||| ||| ||||||||    
T  54091028 aaactttggacaaagacatatactagtttaaaatatta 54091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 534
Target Start/End: Complemental strand, 11383081 - 11383005
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgttttt 534  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||||||| ||||| |||  ||| | |||||||||    
T  11383081 tatgactttagtaatattttaaaatagtca-tgtctttgtcaaaagtttcttaattaaatccatgtttctatgttttt 11383005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 596
Target Start/End: Original strand, 13119371 - 13119420
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  13119371 gacttaattgagaaacttttaacaaagacagggactattttgaaatatta 13119420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 21782225 - 21782176
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||||||||    
T  21782225 gacttaattgaaaaacttttgataaagagagtgactattttgaaatatta 21782176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 513
Target Start/End: Original strand, 39051239 - 39051284
Alignment:
Q  468 taatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||    
T  39051239 taatatttcaaaatagtctctgtcttgatcaaaagtttctcaatta 39051284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 685 - 729
Target Start/End: Complemental strand, 39493670 - 39493626
Alignment:
Q  685 aatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||    
T  39493670 aatattaataaaatcaacgactaatttgaaagtgacttacaaaga 39493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 40942725 - 40942669
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||| ||||||||||||||| |||||  ||| ||| ||||||||||||||||||    
T  40942725 tatgactatattaatattttaaattagtctttgtttttgtcaaaagtttctcaatta 40942669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 51407779 - 51407859
Alignment:
Q  8 tttctttgtatgtt-ctattttgcgactcctaatctaatattttttctgctggttaggatccattgtgattttaataaatt 87  Q
    |||||||||||||| ||||||| ||||||||| ||||  |||  || ||||||||||||   |||||||||||||||||||    
T  51407779 tttctttgtatgttgctattttacgactcctagtctagcattccttatgctggttaggagttattgtgattttaataaatt 51407859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 55264542 - 55264586
Alignment:
Q  469 aatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||||    
T  55264542 aatatttcaaaatagtcaatgtctttgtcaaaagtttctcaatta 55264586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 7403308 - 7403253
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    ||||| |||||||||||||| ||| ||||||||||  | |||||||||||||||||    
T  7403308 tgactttattaatattttaatataatcactgtcttggttaaaagtttctcaattag 7403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 748
Target Start/End: Complemental strand, 13302184 - 13302114
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaa------gatcaatttggtggtttactc 748  Q
    |||| ||||||||| || |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  13302184 aaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtttactc 13302114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 674
Target Start/End: Original strand, 49448196 - 49448271
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||| ||||||  ||||| ||| ||||||||| |||||||| ||  ||||||| |||||||| |||||    
T  49448196 aaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaa 49448271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 674
Target Start/End: Complemental strand, 53924523 - 53924448
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    ||||||| |||| |||||| |||||| ||| |||||||||||||  |||  || |||||||||||||||| |||||    
T  53924523 aaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaa 53924448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 674
Target Start/End: Original strand, 54458707 - 54458782
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||| |||||| ||||||  || |||||||||||| ||||| ||| |||| |||| |||||| |||||    
T  54458707 aaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaa 54458782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 5162867 - 5162913
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttct 507  Q
    ||||||||||||||| ||| ||||| |||||||| ||||||||||||    
T  5162867 actctattaatatttcaaattagtctctgtctttctcaaaagtttct 5162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 33614433 - 33614379
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatt 512  Q
    |||||| ||||||||||| ||| ||||| ||||||||  ||||||||||||||||    
T  33614433 atgactttattaatatttcaaactagtctctgtctttgacaaaagtttctcaatt 33614379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 40942618 - 40942664
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaat 511  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||    
T  40942618 tattaatattttaaactagtcattgtctttgtcaaaagtttttcaat 40942664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 44137420 - 44137474
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||| ||||||||  |||||||| |||||| ||| |||||||    
T  44137420 tgactctattaatatttcaaaatagtatctgtctttgtcaaaaatttatcaatta 44137474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 596
Target Start/End: Complemental strand, 44137479 - 44137429
Alignment:
Q  546 agacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||| ||| ||||||  |||||||| |||||||||||||||||    
T  44137479 agacttaattgataaatttttgacaaagacagatactattttgaaatatta 44137429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 55264625 - 55264671
Alignment:
Q  550 ttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||  |||||| ||||| |||||||||||||    
T  55264625 ttaattgagaaacttttgacaaagacacagactcttttgaaatatta 55264671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 729
Target Start/End: Original strand, 13432781 - 13432830
Alignment:
Q  680 tttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||| ||||||||| ||  ||||||||||||| |||||||||||||    
T  13432781 tttaaaatgttaatagaagcatagactaatttgagaatgacttacaaaga 13432830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 39051322 - 39051367
Alignment:
Q  551 taattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||||||||||  ||||||| ||||||||| ||||||||    
T  39051322 taattgagaaacttttgacaaagacagtgactattttaaaatatta 39051367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 52721869 - 52721902
Alignment:
Q  54 tgctggttaggatccattgtgattttaataaatt 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  52721869 tgctggttaggattcattgtgattttaataaatt 52721902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 55284095 - 55284022
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgt 536  Q
    ||||||||||||| ||  ||||  ||||||||  ||||||||| || |||||||| || |||||||||||||||    
T  55284095 tctattaatatttcaatctagtttctgtctttgccaaaagtttttcgattagatccttatctttatgtttttgt 55284022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 465 - 727
Target Start/End: Original strand, 32502849 - 32503121
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgagaaac 562  Q
    ||||| ||||| ||||||||   ||||||| | ||| ||||||||||||||||||||||| |||||||||||| |||||| ||||  |||||||| |||     
T  32502849 tattagtatttcaaaatagttcatgtctttgttaaatgtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaa 32502948  T
Q  563 ttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgaga 661  Q
    ||||||  |||||| ||||||||||||||||||||| ||||||| |||| ||||||| ||||| ||| ||||| ||| |||||||| |||||||||||||    
T  32502949 ttttgacaaagacaaagactattttgaaatattatcaaaagtttatcaattagatctctgtctctatgtttttatcatatgacgagggacttaattgaga 32503048  T
Q  662 aacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    | ||||| |||||       ||||||||||||||| |||||| |    ||||||||||| | |||||||||||    
T  32503049 atcttttgacaaagacaatgactattttaaaatatcaatagagtgtgagactaatttgataatgacttacaaa 32503121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 496 - 674
Target Start/End: Complemental strand, 8033794 - 8033614
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattgagaaacttttgatcaagacagagactattttgaaata 593  Q
    |||||||||||||||||  |||  ||||| |||| |||||||  ||||| |||  |||||||||||||||||| |  ||||||  ||||||||| ||| |    
T  8033794 tcaaaagtttctcaattcaatctatgtctctatgattttgtcatatgacgagagacttaattgagaaacttttaaa-aagacaatgactattttaaaaga 8033696  T
Q  594 ttatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    || ||||| |||| |||| |||||   ||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  8033695 ttgtcaaaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaa 8033614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 723
Target Start/End: Complemental strand, 17659019 - 17658784
Alignment:
Q  498 aaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattgagaaacttttgatcaagacagagactattttgaaatatt 595  Q
    |||||||| ||||||||||| || ||| | |||||||||| | |||| |||  |||  |||| ||||||||||  |||| |  |||||||||||||||||    
T  17659019 aaaagtttttcaattagatcgttttctctttgtttttgtcacttgacgagagacttggttgaaaaacttttgacaaagatattgactattttgaaatatt 17658920  T
Q  596 atcaaagt-ttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaat 687  Q
     ||||| | || |||| |||||| || ||| | | |||||||||||||||||| ||||||||||||||| |||| |||||       |||||||| ||||    
T  17658919 gtcaaaatcttttcaattagatcattttctctttgtttttgtcacatgacgagagacttaattgagaaatttttgacaaagacaatgactattttgaaat 17658820  T
Q  688 attaatagaatcaaggactaatttgagagtgactta 723  Q
    ||||||||| |   |||||||||||| |||||||||    
T  17658819 attaatagagttggggactaatttgatagtgactta 17658784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 459 - 670
Target Start/End: Complemental strand, 8033926 - 8033720
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattg 556  Q
    ||||| ||||||||||||||||| ||   ||||||| ||||||||||||||||||||||    ||  | ||||||||||| || ||  || |||||||||    
T  8033926 tgactttattaatattttaaaatggtttatgtctttgtcaaaagtttctcaattagatccccatc--tctgtttttgtcgaataacgaaacacttaattg 8033829  T
Q  557 agaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaa 655  Q
    | ||||||||       |||  ||||||||||||| ||| || |||||||||||| |  |||| ||||| |||  |||||||| |||||||| |||||||    
T  8033828 ataaactttt------aacaatgactattttgaaagattgtcaaaagtttctcaattcaatctatgtctctatgattttgtcatatgacgagagacttaa 8033735  T
Q  656 ttgagaaacttttaa 670  Q
    |||||||||||||||    
T  8033734 ttgagaaacttttaa 8033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 459 - 596
Target Start/End: Complemental strand, 22191562 - 22191422
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtcttta-tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaatt 555  Q
    |||||||||||||||||||||||||||  |||||||  | |||||||| ||||||||||   | ||| | | |||||||| |||||| ||  |||||||     
T  22191562 tgactctattaatattttaaaatagtctatgtcttttgttaaaagtttttcaattagattcatatctctttatttttgtcacatgacgagggacttaata 22191463  T
Q  556 gagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||  |||||| |||||||||| ||||||||    
T  22191462 gagaaacttttgacaaagacaaagactattttaaaatatta 22191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 22191537 - 22191590
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 728  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  22191537 actattttaaaatattaatagagtcagggactaatttgagagtgacttacaaag 22191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 596
Target Start/End: Complemental strand, 6511188 - 6511057
Alignment:
Q  467 ttaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatga-caagact-taattgagaaactt 564  Q
    ||||||||||||| ||||  |||| ||| ||||||||||||||||| | ||  |||||||||||||||||| |||||  |||| | || |||||||| ||    
T  6511188 ttaatattttaaattagtttctgtgtttgtcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatgatgaagaatctatttgagaaattt 6511089  T
Q  565 ttgatcaagacagagactattttgaaatatta 596  Q
    ||||  ||||  ||||||||||||||||||||    
T  6511088 ttgacaaagatggagactattttgaaatatta 6511057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 520
Target Start/End: Original strand, 39760176 - 39760235
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcatt 520  Q
    ||||||||||||||| |||||||||  ||| |||||||||||||||||||||| ||||||    
T  39760176 actctattaatatttcaaaatagtctatgtttttatcaaaagtttctcaattaaatcatt 39760235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 33940085 - 33940031
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  33940085 tgactttattaatatttcaaaatagtcactgtttttttcaaaagtttctcaatta 33940031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 17658809 - 17658861
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  17658809 actctattaatatttcaaaatagtcattgtctttgtcaaaaatttctcaatta 17658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 32014028 - 32013973
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||| |||||| |||||||||||||||||| |||||| |||||||||||    
T  32014028 tatgactctattgatatttcaaaatagtcactgtctttgtcaaaa-tttctcaatta 32013973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 32503092 - 32503040
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  32503092 actctattgatattttaaaatagtcattgtctttgtcaaaagattctcaatta 32503040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 610
Target Start/End: Complemental strand, 8033692 - 8033575
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattgagaaacttttgatcaagacagagactattttgaaata 593  Q
    |||||||||| ||||||||||   ||||| ||||||||||||  ||||| |||  |||||||||||||||||| |  ||||||  || |||||||||| |    
T  8033692 tcaaaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaagacaaggattattttgaaaga 8033593  T
Q  594 ttatc-aaagtttctcaa 610  Q
    || || ||||||||||||    
T  8033592 ttgtcaaaagtttctcaa 8033575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 674
Target Start/End: Complemental strand, 22191492 - 22191446
Alignment:
Q  628 tatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||    
T  22191492 tatttttgtcacatgacgagggacttaatagagaaacttttgacaaa 22191446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 596
Target Start/End: Complemental strand, 39760229 - 39760183
Alignment:
Q  550 ttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||    
T  39760229 ttaattgagaaacttttgataaaaacatagactattttgaaatatta 39760183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 637 - 730
Target Start/End: Original strand, 39760359 - 39760459
Alignment:
Q  637 cacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||| ||||||||||||| | |||| |||||       |||||||| ||||||||||| | ||| |||||||||||||| | |||||||||||    
T  39760359 cacatgacgagggacttaattgagagatttttgacaaagatatgaactattttgaaatattaatatagtcatggactaatttgagaatcacttacaaaga 39760458  T
Q  730 t 730  Q
    |    
T  39760459 t 39760459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 596
Target Start/End: Original strand, 33940027 - 33940076
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||||||||||||||  || |||| ||||||||||||||||||    
T  33940027 gacttaattgagaaacttttgaaaaaaacagtgactattttgaaatatta 33940076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 22191420 - 22191467
Alignment:
Q  466 attaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  22191420 attaatattttaaaatagtctttgtctttgtcaaaagtttctctatta 22191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 33939958 - 33940004
Alignment:
Q  469 aatattttaaaatagtcactgtctttatcaaaagtttctcaattaga 515  Q
    ||||||||||||||||   ||||||| ||||||||||||||||||||    
T  33939958 aatattttaaaatagtatatgtctttgtcaaaagtttctcaattaga 33940004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 39760286 - 39760332
Alignment:
Q  469 aatattttaaaatagtcactgtctttatcaaaagtttctcaattaga 515  Q
    |||||||||||||||||| ||||||| | ||||||||||||| ||||    
T  39760286 aatattttaaaatagtcattgtctttgttaaaagtttctcaaataga 39760332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 459 - 674
Target Start/End: Complemental strand, 20124292 - 20124074
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattg 556  Q
    ||||||||| ||||||| |||||||||| ||| ||| |||||||||| |||||||||||  ||||| |||||||||||| | | || |||  |||||| |    
T  20124292 tgactctatcaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatccatgtctctatgtttttgtcacctaacgagatacttaatcg 20124193  T
Q  557 agaaacttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaa 655  Q
    | || |||||||  | ||||||||||||||||||||||  ||||| |||||||||||||||| ||||||  || ||||||| |||||||||| |||||||    
T  20124192 aaaagcttttgacaaggacagagactattttgaaatatagtcaaaagtttctcaactagatcattgtcttgatgtttttgttacatgacgagagacttaa 20124093  T
Q  656 ttgagaaacttttaacaaa 674  Q
    ||||||||||||| |||||    
T  20124092 ttgagaaacttttgacaaa 20124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 498 - 727
Target Start/End: Original strand, 47337143 - 47337374
Alignment:
Q  498 aaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgagaaacttttgatcaagacagagactattttgaaatatt 595  Q
    ||||||||| |||||||||   ||||| |||||||  ||| |||||| ||||  ||||| || ||||||||||| ||  ||  |||||||||||||||||    
T  47337143 aaaagtttcccaattagattcatgtctctatgttt--gtcacatgacgagacaattaatcgaaaaacttttgataaaaccaatgactattttgaaatatt 47337240  T
Q  596 atcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaat 693  Q
     ||||| |||| |||| ||||||  ||||| ||| ||||||||| || ||||| |||||||||||||||||||| ||||| |||||||| || |||||||    
T  47337241 gtcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaacttttgacaaatactattttgaattattaat 47337340  T
Q  694 agaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||| ||| | ||||||||||||||||||| ||||    
T  47337341 agagtcaggaactaatttgagagtgactttcaaa 47337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 461 - 730
Target Start/End: Original strand, 33428919 - 33429197
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaattgag 558  Q
    ||||||||||||||| ||||||||   | ||||| |||||||||||||||||| ||| || ||| |||||||||||   ||||| ||  | ||   ||||    
T  33428919 actctattaatatttcaaaatagttcatatctttgtcaaaagtttctcaattaaatc-ttctctctatgtttttgttatatgacgagggatttggctgag 33429017  T
Q  559 aaacttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaatt 657  Q
    ||||||||||  |||||  | |||||||||||||||| ||||| ||||||||| |||||   | ||| | | |||||||||||||||||  |||||||||    
T  33429018 aaacttttgacaaagacgtaaactattttgaaatattgtcaaatgtttctcaattagattcatttctctttgtttttgtcacatgacgaaagacttaatt 33429117  T
Q  658 gagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    || |||||||| | |||       | |||||||||||||||||||| |  | ||||||||||| ||||||||||||||||    
T  33429118 gaaaaacttttgataaagatattgattattttaaaatattaatagagttgatgactaatttgaaagtgacttacaaagat 33429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 38181382 - 38181459
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    |||||||||||||||| ||| ||||| |  ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  38181382 gactctattaatatttcaaactagtctccatctttatcaaaagtttctcaatttgatcattatctttatgtttttgtc 38181459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 696
Target Start/End: Complemental strand, 1163553 - 1163420
Alignment:
Q  571 aagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttta 669  Q
    |||||| |||||| ||||||||| | ||||| |||| |||| |||| || ||| | ||||||||| |||||||||||| ||||||||||||||||||||     
T  1163553 aagacatagactactttgaaatactgtcaaaagtttttcaattagacctatgtttctatatttttttcacatgacgagagacttaattgagaaacttttg 1163454  T
Q  670 aca-------aaactattttaaaatattaataga 696  Q
    |||       ||||||||||||||||||||||||    
T  1163453 acaaacacataaactattttaaaatattaataga 1163420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 496 - 596
Target Start/End: Complemental strand, 20124152 - 20124050
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattgagaaacttttgatcaagacagagactattttgaaata 593  Q
    ||||||||||||||| |||||||||||||| ||||||||||  |||||| |||  ||||||||||||||||||||  |||| |   ||||||||||||||    
T  20124152 tcaaaagtttctcaactagatcattgtcttgatgtttttgttacatgacgagagacttaattgagaaacttttgacaaagagatgaactattttgaaata 20124053  T
Q  594 tta 596  Q
    |||    
T  20124052 tta 20124050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 461 - 544
Target Start/End: Original strand, 29504802 - 29504885
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    |||||| |||||||||||| |||||| ||||||||| |||||||| |||||||| ||| |||||||||| ||||||| ||||||    
T  29504802 actctaataatattttaaactagtcattgtctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgac 29504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 599 - 748
Target Start/End: Complemental strand, 40472969 - 40472813
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatatta 691  Q
    |||||||||||| ||| | | ||||| ||| |||||||||||  | ||| ||| |||| ||||||||||| |||||       |||| |||||||| |||    
T  40472969 aaagtttctcaattaggtatatgtctttatgtttttgtcacacaatgagggacctaatcgagaaacttttgacaaagaaataaactagtttaaaatttta 40472870  T
Q  692 atagaatcaaggactaatttgagagtgacttacaaagatcaatttggtggtttactc 748  Q
    ||||| |||| ||||||||||||||| |||||||||||  |||||| ||||||||||    
T  40472869 atagagtcaaagactaatttgagagtaacttacaaagactaatttgctggtttactc 40472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 460 - 568
Target Start/End: Complemental strand, 28860668 - 28860558
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtc-tttatgtttttgtcgcatgac--aagacttaattg 556  Q
    |||||||||||||||| ||| ||||| || | ||| ||||||||||||||||||||||||| || |||||||||||||| ||||||  | ||| ||||||    
T  28860668 gactctattaatatttcaaactagtctcttt-tttgtcaaaagtttctcaattagatcattatcttttatgtttttgtcccatgacgaatgacctaattg 28860570  T
Q  557 agaaacttttga 568  Q
    ||||| ||||||    
T  28860569 agaaatttttga 28860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 581 - 729
Target Start/End: Complemental strand, 16298350 - 16298194
Alignment:
Q  581 ctattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa----- 674  Q
    ||||||| ||||||| || ||||||| |||| ||||||  ||||| ||||||||||||| |||| ||| || ||||||||||| | ||| |||||         
T  16298350 ctattttaaaatattgtccaaagtttttcaattagatcaatgtctctatatttttgtcatatgatgagggatttaattgagaatcatttgacaaacacag 16298251  T
Q  675 --actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
      | |||||||||||||||||| | ||  |||||| |||||||||||||||||||||    
T  16298250 agattattttaaaatattaataaagtcgtggactagtttgagagtgacttacaaaga 16298194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 55447230 - 55447176
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  55447230 tgactctcttaatattttaaaatagtctctgtctttctcaaaagtttctcaatta 55447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 668
Target Start/End: Complemental strand, 11413219 - 11413150
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 668  Q
    |||||||||||| |||||||||||||  || ||||| |||||||||||| | ||||||||||||||||||    
T  11413219 aaagtttctcaattagatctttgtcttaatgtttttatcacatgacgaggggcttaattgagaaactttt 11413150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 567
Target Start/End: Complemental strand, 11413247 - 11413149
Alignment:
Q  471 tattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttg 567  Q
    ||||| ||||||||   ||||||  |||||||||||||||||||||| ||||||| |||||||| || |||||| |  | |||||||||||||||||||    
T  11413247 tatttcaaaatagtatttgtcttagtcaaaagtttctcaattagatctttgtcttaatgtttttatcacatgacgaggggcttaattgagaaacttttg 11413149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 729
Target Start/End: Original strand, 40860947 - 40861028
Alignment:
Q  649 gacttaattgagaaacttttaacaaa-actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||| |||||  |||||| || ||| |||||||||||||    
T  40860947 gacttaattgagaaacttttgacaaagactaatttgaaatattaataaaatcagagactaaattaagaatgacttacaaaga 40861028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 718
Target Start/End: Original strand, 29504872 - 29504966
Alignment:
Q  631 ttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtg 718  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||       |||| ||||||||||||||||| |  ||||||||||||||||||    
T  29504872 ttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagtttaaaatattaatagagttgaggactaatttgagagtg 29504966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 33429165 - 33429113
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||||||||| ||| | |||||||||||||||| |||||||    
T  33429165 actctattaatattttaaaataatcaatatctttatcaaaagtttttcaatta 33429113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 39840690 - 39840742
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaat 511  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||    
T  39840690 tgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttctcaat 39840742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 513
Target Start/End: Complemental strand, 33075353 - 33075263
Alignment:
Q  424 gtctatgtctttataacacactttcaaattaattatgac-tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||  |||| |||||||||| || |  ||||||||||||||||| |||||| ||| ||| |||||| ||| |||||||    
T  33075353 gtctatgtctttataagtcactctcaaattaatcattaaatctattaatattttaaattagtcattgtttttgtcaaaaatttatcaatta 33075263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 729
Target Start/End: Complemental strand, 39840760 - 39840661
Alignment:
Q  636 tcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 728  Q
    |||||||||||| |||||| ||||||||||||| ||||||       ||||||| ||||||||||||| |||  ||||||||||||| | ||||||||||    
T  39840760 tcacatgacgagggactta-ttgagaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaag 39840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 48338342 - 48338396
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||| || |||||||||  ||||||| ||||||||||||||||||    
T  48338342 tgactctattaatacttcaaaatagtccatgtctttgtcaaaagtttctcaatta 48338396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 55447175 - 55447221
Alignment:
Q  550 ttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||    
T  55447175 ttaattgagaaacttttgagaaagacagagactattttaaaatatta 55447221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 513
Target Start/End: Original strand, 1163414 - 1163470
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||| |||||||||||||||||||||||   ||| ||| ||||||||||||||||||    
T  1163414 tatgtctctattaatattttaaaatagtttatgtgtttgtcaaaagtttctcaatta 1163470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 514
Target Start/End: Complemental strand, 27812352 - 27812296
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||| ||||| |||||||||  ||||||| | |||||||||||||||||    
T  27812352 atgactctattactatttaaaaatagtctatgtctttgttaaaagtttctcaattag 27812296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 42045804 - 42045856
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||| |||||||||| ||||| | |||||||||| |||||||    
T  42045804 actctattaatatttcaaaatagtcattgtctatgtcaaaagtttttcaatta 42045856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 729
Target Start/End: Original strand, 33075229 - 33075346
Alignment:
Q  619 ttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaattt 711  Q
    |||||| |||||||||||||  ||||||| ||  ||||||| ||| |||| ||||||       ||| ||||||||||||||||| | || || ||||||    
T  33075229 ttgtctttatatttttgtcatgtgacgagagatataattgataaatttttgacaaaaacaatgactaatttaaaatattaatagatttaatgattaattt 33075328  T
Q  712 gagagtgacttacaaaga 729  Q
    |||||||||||| |||||    
T  33075329 gagagtgacttataaaga 33075346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 45965852 - 45965797
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    ||||||||||||||||| ||| |||| | | ||||| |||||||||||||||||||    
T  45965852 tgactctattaatatttcaaactagttattatctttttcaaaagtttctcaattag 45965797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 47337242 - 47337316
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttga 568  Q
    |||||||||| |||||||||||  ||||| ||||||||||||  || || |  ||||||||||||||||||||||    
T  47337242 tcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaacttttga 47337316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 596
Target Start/End: Complemental strand, 48338482 - 48338351
Alignment:
Q  469 aatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgt---cgcatgacaag--acttaattgagaaact 563  Q
    |||||||| ||||||||  ||||||| |||||||||| |||||| ||||| ||| ||||||||||| |   | || ||  ||  ||||||||||||||||    
T  48338482 aatatttttaaatagtctatgtctttgtcaaaagtttatcaatt-gatcaatgtttttatgtttttttttccacacgaggagggacttaattgagaaact 48338384  T
Q  564 tttgatcaagacagagactattttgaaatatta 596  Q
    |||||  ||||||  |||||||||||| |||||    
T  48338383 tttgacaaagacatggactattttgaagtatta 48338351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 674
Target Start/End: Original strand, 48338439 - 48338561
Alignment:
Q  552 aattgagaaacttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtga 650  Q
    |||||| ||||||||||  |||||| |||||||||  ||||||| ||||| ||||||||| || |||  ||| | ||| ||||| ||||| ||| || ||    
T  48338439 aattgataaacttttgacaaagacatagactatttaaaaatattgtcaaaagtttctcaattaaatccatgtttctatgttttt-tcacacgaccagaga 48338537  T
Q  651 cttaattgagaaacttttaacaaa 674  Q
     ||||||||||||||||| |||||    
T  48338538 tttaattgagaaacttttgacaaa 48338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 729
Target Start/End: Original strand, 49547724 - 49547779
Alignment:
Q  674 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||| ||| ||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  49547724 aactagtttgaaatattaatataatcatggactaatttgagagtgatgtacaaaga 49547779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 513
Target Start/End: Original strand, 55446976 - 55447031
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||||| |||||||||  ||||||| | |||| |||||||||||    
T  55446976 atgactctattaatatttcaaaatagtccatgtctttgttaaaattttctcaatta 55447031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 537
Target Start/End: Complemental strand, 40473005 - 40472931
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    ||||||||||||||||| ||||   | | ||| ||||||||||||||||||| |   ||||||||||||||||||    
T  40473005 tctattaatattttaaattagtatttatttttgtcaaaagtttctcaattaggtatatgtctttatgtttttgtc 40472931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 729
Target Start/End: Complemental strand, 45965729 - 45965675
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||| || |||||||||||||||||  || ||||||||||| ||||||||||||    
T  45965729 actatattgaaatattaatagaatcagagattaatttgagagcgacttacaaaga 45965675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 595
Target Start/End: Complemental strand, 41709248 - 41709199
Alignment:
Q  546 agacttaattgagaaacttttgatcaagacagagactattttgaaatatt 595  Q
    |||||||||||||||||||||||  |||| ||||| || |||||||||||    
T  41709248 agacttaattgagaaacttttgacaaagatagagattagtttgaaatatt 41709199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 568
Target Start/End: Original strand, 45965691 - 45965815
Alignment:
Q  447 tcaaattaat-tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgaca 545  Q
    |||||||||| | ||| ||||||||||||| || ||||||  ||||||| | ||||  ||||||||||  ||  | |||||||||||||||   ||||||    
T  45965691 tcaaattaatctctgattctattaatatttcaatatagtccttgtctttgttaaaaaattctcaattatgtccatatctttatgtttttgttatatgaca 45965790  T
Q  546 a--gacttaattgagaaacttttga 568  Q
    |  ||| ||||||||||||||||||    
T  45965791 aaggacctaattgagaaacttttga 45965815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 727
Target Start/End: Original strand, 45965826 - 45965879
Alignment:
Q  674 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||| ||| ||||||||||||| |||   ||||||||||||||||||||||||    
T  45965826 aactagtttgaaatattaatagagtcacaaactaatttgagagtgacttacaaa 45965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 52684842 - 52684875
Alignment:
Q  54 tgctggttaggatccattgtgattttaataaatt 87  Q
    |||||||||||||||| |||||||||||||||||    
T  52684842 tgctggttaggatccactgtgattttaataaatt 52684875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 465 - 646
Target Start/End: Original strand, 29490409 - 29490595
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgagaaac 562  Q
    ||||||||||||||||||||   ||||||| | ||||||||||||||||||||  ||||| | |||||||| | |||||| ||||  ||| |||||||||    
T  29490409 tattaatattttaaaatagtttttgtctttgtaaaaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaac 29490508  T
Q  563 ttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatata--tttttgtcacatgacga 646  Q
    ||||||| |||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  29490509 ttttgataaagatagacactattttgaaatattatcaaaagtttctcaattagatctttgtctatatatgtttttgtcacacgacga 29490595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 599 - 730
Target Start/End: Complemental strand, 33229628 - 33229496
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 697  Q
    |||||||||||| ||||||  ||||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| |||| ||| ||||||||||||      
T  33229628 aaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaagactagtttgaaatattaataggg 33229529  T
Q  698 tcaaggactaatttgagagtgacttacaaagat 730  Q
    |   ||||||||||||||| |||||||||||||    
T  33229528 ttggggactaatttgagagcgacttacaaagat 33229496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 460 - 568
Target Start/End: Complemental strand, 33229667 - 33229557
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattga 557  Q
    |||| ||||||||||||||| ||||| || | ||| ||||||||||||||||||||||  |||||||||||||||||| |||||| |  ||| |||||||    
T  33229667 gactttattaatattttaaattagtctctctgtttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattga 33229568  T
Q  558 gaaacttttga 568  Q
    |||||||||||    
T  33229567 gaaacttttga 33229557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 725
Target Start/End: Complemental strand, 32029594 - 32029411
Alignment:
Q  550 ttaattgagaaacttttgatcaa-gacagagactattttgaaatattatca-aagtttctcaactagatctttgtctatatatttttgtcacatgacgag 647  Q
    |||||||||||||||||||  || |||| ||||||||||||||||||  || ||||||||||| || | |  ||| | ||| ||||| | ||||||||||    
T  32029594 ttaattgagaaacttttgacaaaagacatagactattttgaaatattggcagaagtttctcaattataaccatgtttctatgttttttttacatgacgag 32029495  T
Q  648 tgacttaattgagaaacttttaacaaa------actattttaaaatattaatagaatcaaggactaatttgagagtgacttaca 725  Q
     ||||||||||| ||||||||||||||      |||||||| ||||||||| ||| |||  || |||||||||| | |||||||    
T  32029494 ggacttaattgaaaaacttttaacaaagataagactattttgaaatattaacagagtcagagattaatttgagaatcacttaca 32029411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 675 - 729
Target Start/End: Complemental strand, 5840409 - 5840355
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  5840409 actattttaaaatattaatagaatcagagactaatttgagagtaacttacaaaga 5840355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 459 - 596
Target Start/End: Original strand, 21136618 - 21136757
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattg 556  Q
    ||||||||||||||||| |||||||||  | ||||| |||||||||| |||||||| ||  | |||||||  ||||||| | ||||  || || ||||||    
T  21136618 tgactctattaatatttcaaaatagtccttatctttgtcaaaagtttttcaattaggtccctttctttatacttttgtcacttgacgaaaaacctaattg 21136717  T
Q  557 agaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||  ||||||  |||| || ||||||||||||||||||    
T  21136718 agaattttttgacaaagatagtgactattttgaaatatta 21136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 29490431 - 29490376
Alignment:
Q  672 aaaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||||||||||||||||||| |||||  ||||||||||| |||||||||||||    
T  29490431 aaaactattttaaaatattaatataatcatagactaatttgatagtgacttacaaa 29490376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 723
Target Start/End: Original strand, 41687771 - 41687897
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaa-cttttaacaaaa-ctattttaaaatattaataga 696  Q
    |||||||||||| ||| | ||| ||| ||| ||||||||||| | |||  ||||||||||| ||| ||||||| |||| ||| ||| |||||||||||||    
T  41687771 aaagtttctcaattaggtttttatctttatgtttttgtcacaaggcgaaagacttaattgaaaaatcttttaataaaaactagtttgaaatattaataga 41687870  T
Q  697 atcaaggactaatttgagagtgactta 723  Q
     |||   ||||||||||||||||||||    
T  41687871 gtcacaaactaatttgagagtgactta 41687897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 10028775 - 10028852
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    |||||||||||||||| |||  |||| || |||||  |||||||||||||||||| ||  ||||||||||||||||||    
T  10028775 gactctattaatatttcaaatcagtctctatctttgccaaaagtttctcaattaggtccatgtctttatgtttttgtc 10028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 564
Target Start/End: Complemental strand, 23961684 - 23961584
Alignment:
Q  466 attaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaattgagaaact 563  Q
    |||||||||| ||||||||| ||  |||||||||||||||| |||||||||   ||||| ||||| |||||| | |||||||  |||||||||| |||||    
T  23961684 attaatatttcaaaatagtccctaactttatcaaaagtttcacaattagattcatgtctctatgtctttgtcacttgacaagacacttaattgaaaaact 23961585  T
Q  564 t 564  Q
    |    
T  23961584 t 23961584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 496 - 730
Target Start/End: Complemental strand, 41424661 - 41424409
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa-----------gacttaattgagaaacttttgatcaagacagagactat 584  Q
    |||||||||||||||||| ||||||| || ||||||||||||  ||||| |           ||||||||||| ||||||||||  ||||||   |||||    
T  41424661 tcaaaagtttctcaattatatcattgcctctatgtttttgtcatatgacgaggaatttaattgacttaattgaaaaacttttgacaaagacatgaactat 41424562  T
Q  585 tttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaac-------aaaac 676  Q
    ||| ||||||| || |||| ||| ||| |||||| || ||||| | ||||||||||| |||||  ||||||||||| ||| |||| ||       |||||    
T  41424561 ttttaaatattctcaaaagcttc-caattagatccttttctatttgtttttgtcacaagacgatagacttaattgaaaaatttttgacaaaaataaaaac 41424463  T
Q  677 tattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    || ||||||||||||||||| |||  |||| |||||| | | ||||||||||||    
T  41424462 taatttaaaatattaatagagtcagagactgatttgaaaattacttacaaagat 41424409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 596
Target Start/End: Original strand, 29490540 - 29490645
Alignment:
Q  493 ttatcaaaagtttctcaattagatcattgtctttat--gtttttgtcgcatgac-aagacttaattgagaaacttttgatcaagacagagactattttga 589  Q
    ||||||||||||||||||||||||| |||||| |||  ||||||||| || ||| |||| ||||| |||||||||||||  |||| | ||| |||||| |    
T  29490540 ttatcaaaagtttctcaattagatctttgtctatatatgtttttgtcacacgacgaagatttaat-gagaaacttttgacgaagataaagattattttaa 29490638  T
Q  590 aatatta 596  Q
    |||||||    
T  29490639 aatatta 29490645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 514
Target Start/End: Complemental strand, 21136763 - 21136711
Alignment:
Q  462 ctctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||||| |||||||||||| ||||| ||||||  |||||||||||    
T  21136763 ctctattaatatttcaaaatagtcactatctttgtcaaaaaattctcaattag 21136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 722
Target Start/End: Complemental strand, 21136643 - 21136596
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgactt 722  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||    
T  21136643 actattttgaaatattaatagagtcaaagactaatttgagaatgactt 21136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 729
Target Start/End: Original strand, 10028897 - 10028951
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||| ||| ||||||||||| | |||| |||||||||||||||||| ||||||||    
T  10028897 actagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaaga 10028951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 6443371 - 6443338
Alignment:
Q  54 tgctggttaggatccattgtgattttaataaatt 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  6443371 tgctggttaggattcattgtgattttaataaatt 6443338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 668
Target Start/End: Original strand, 29490443 - 29490512
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactttt 668  Q
    |||||||||||| ||||||| ||||| | | |||||| |||||||||||  | ||| |||||||||||||    
T  29490443 aaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaactttt 29490512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 594
Target Start/End: Original strand, 32029548 - 32029676
Alignment:
Q  469 aatattttaaaatagtcactgtcttta-tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttt 565  Q
    ||||||| |||||||||  |||||||  |||||||||||||||||| | |  ||| | ||||||||| || ||||||||  |||| |||||||||| |||    
T  32029548 aatatttcaaaatagtctatgtcttttgtcaaaagtttctcaattaaacccatgtttctatgtttttttcacatgacaagggactaaattgagaaatttt 32029647  T
Q  566 tgatcaagacagagactattttgaaatat 594  Q
    |||  ||||||   |||||||| ||||||    
T  32029648 tgacaaagacatgaactattttaaaatat 32029676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 32029687 - 32029634
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatt 512  Q
    |||||||||| |||||||||||||||   ||||||| |||||| ||||||||||    
T  32029687 tgactctatttatattttaaaatagttcatgtctttgtcaaaaatttctcaatt 32029634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 460 - 729
Target Start/End: Complemental strand, 39643299 - 39643020
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattga 557  Q
    ||||| |||||||||| |||||||||| ||| ||| |||||||||| ||||||||||   ||||| |||||||||||| |||||| | |  |||||| ||    
T  39643299 gactccattaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatttatgtctctatgtttttgtcacatgacgatacgcttaatcga 39643200  T
Q  558 gaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaat 656  Q
    |||||||||||   ||||| | ||||||||||||||||||| ||| |||||||| || ||||  |||| ||| |||||||||||||||||  ||||||||    
T  39643199 gaaacttttgacagagacatatactattttgaaatattatcaaaaatttctcaattaaatctccgtctctatgtttttgtcacatgacgaaagacttaat 39643100  T
Q  657 tgagaaacttttaacaa-------aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||| |||||||| | ||       ||  ||||||||||||||||||| |||   |||||||| ||||| |||||||||||    
T  39643099 tgataaacttttgataaagacaagaagcattttaaaatattaatagagtcataaactaattttagagtaacttacaaaga 39643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 461 - 618
Target Start/End: Original strand, 9900231 - 9900391
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgag 558  Q
    |||||||||||||||||||||| |   | ||||| |||||||||||||||||||||| |||| | |||||||||||| |||| |||  || |||||||||    
T  9900231 actctattaatattttaaaataatttttatctttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgag 9900330  T
Q  559 aaacttttgatcaagacagagactattttgaaatattat-caaagtttctcaactagatct 618  Q
    ||| ||||||  || |||   |||||||||| ||||| | ||||||||||| | |||||||    
T  9900331 aaatttttgacaaaaacatgaactattttgagatattgtccaaagtttctcgattagatct 9900391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 566
Target Start/End: Complemental strand, 33391557 - 33391453
Alignment:
Q  464 ctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaa 561  Q
    |||||| ||||| ||| ||||| || ||||||||||||||||||||||| | ||| ||||||||||||||  || ||||||||  ||| |||||||||||    
T  33391557 ctattagtatttcaaattagtccctatctttatcaaaagtttctcaatttggtcaatgtctttatgttttattcacatgacaagggacataattgagaaa 33391458  T
Q  562 ctttt 566  Q
    |||||    
T  33391457 ctttt 33391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 461 - 725
Target Start/End: Complemental strand, 36184782 - 36184522
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgag 558  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||    ||||          ||||| |||||| ||||  ||||| |||    
T  36184782 actctattagtatttcaaaatagtcactgtctttgtcaaaagtttttcaattag----ttgt----------ttgtcacatgacgagacacttaatcgag 36184697  T
Q  559 aaacttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaatt 657  Q
    ||||||||||  |||||  | |||| ||||||||||||||||| ||||||||| ||||| ||| ||| ||| |||| ||   |||||||| |||||||||    
T  36184696 aaacttttgacaaagacgaatactactttgaaatattatcaaaggtttctcaattagatttttatctctatgttttcgttgtatgacgagggacttaatt 36184597  T
Q  658 gagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttaca 725  Q
    |||||| |||| ||| |       | |||||| ||||||||||| | | |  |||||||||||||||||||||||    
T  36184596 gagaaatttttgacatagataatgattattttgaaatattaataaagttatagactaatttgagagtgacttaca 36184522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 447 - 543
Target Start/End: Original strand, 4902204 - 4902300
Alignment:
Q  447 tcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatga 543  Q
    ||||||||||||||| | ||||||||||||||| ||||| || |||||  |||||||||||||||||| |   | |||||||||||||||| |||||    
T  4902204 tcaaattaattatgagtttattaatattttaaattagtccctatctttgccaaaagtttctcaattaggtttatatctttatgtttttgtcacatga 4902300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 488 - 596
Target Start/End: Original strand, 31066010 - 31066121
Alignment:
Q  488 tgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattgagaaac-ttttgatcaagacagagactat 584  Q
    ||||||| ||||||||||||| |||| | |  ||| | ||||||||| |||||||||  |||||||||||||||||  ||||||| ||||||||||||||    
T  31066010 tgtctttgtcaaaagtttctccattaaacctatgtttctatgtttttttcgcatgacgaaagacttaattgagaaaaattttgataaagacagagactat 31066109  T
Q  585 tttgaaatatta 596  Q
    ||| ||||||||    
T  31066110 tttaaaatatta 31066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 601
Target Start/End: Original strand, 8285055 - 8285201
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatga--caagacttaat 554  Q
    ||||||||||||||||||||||||||    |||||||| ||||||||||||||||||  ||  ||| | |||||||| ||| |||||   || | |||||    
T  8285055 tatgactctattaatattttaaaataagttctgtctttgtcaaaagtttctcaattaagtccatgtgtctatgttttagtcacatgatcaaacagttaat 8285154  T
Q  555 tgagaaacttttgatcaagacagagactattttgaaatattatcaaa 601  Q
    ||||||||||||||  | |||| ||||||||||  |||||| |||||    
T  8285155 tgagaaacttttgacaatgacaaagactattttataatattgtcaaa 8285201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 715
Target Start/End: Original strand, 8285218 - 8285301
Alignment:
Q  639 catgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgaga 715  Q
    |||||||||||||||||||||||||||||| |||||       |||||||||||||||||||| | ||| ||||||||||||||    
T  8285218 catgacgagtgacttaattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 31065879 - 31065931
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  31065879 actctattaatatttcaaaatagtcattgtctttgtcaaaagtttctcaatta 31065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 3621003 - 3620904
Alignment:
Q  445 tttcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    ||||| |||||| |||||||| ||||||||  ||| ||||| | || |||||||||||||| |||||||| ||  |||||||||||||| ||| ||||||    
T  3621003 tttcatattaatcatgactctgttaatattacaaactagtctcagtttttatcaaaagtttttcaattaggtctctgtctttatgttttggtcacatgac 3620904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 596
Target Start/End: Original strand, 5971789 - 5971930
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaat 554  Q
    ||||||||||||||||||| ||| || | | ||| ||| |||||||||| | |||||  ||  |||||||||||||||||| ||| ||||  | ||||||    
T  5971789 tatgactctattaatatttcaaattaataattgtttttgtcaaaagtttttgaattaagtctatgtctttatgtttttgtcacataacaaatggcttaat 5971888  T
Q  555 tgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||| ||||||  ||||||  ||||| ||| ||||||||    
T  5971889 tgagaaagttttgacaaagacaatgactagtttaaaatatta 5971930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 31066129 - 31066075
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaa-gtttctcaatta 513  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  31066129 gactctattaatattttaaaatagtctctgtctttatcaaaatttttctcaatta 31066075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 5971938 - 5971885
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||||||| |||||| ||||||| |||||| |||||||||||    
T  5971938 gactctattaatattttaaactagtcattgtctttgtcaaaactttctcaatta 5971885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 713
Target Start/End: Original strand, 1862345 - 1862429
Alignment:
Q  630 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaatcaaggactaatttga 713  Q
    ||||| |||||||| ||||||||||||||||||   ||| ||||| ||| |||| ||||||||||||| |||| |||||||||||    
T  1862345 tttttttcacatgatgagtgacttaattgagaagtatttgacaaagactgttttgaaatattaatagagtcaaagactaatttga 1862429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 675
Target Start/End: Original strand, 9900269 - 9900345
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 675  Q
    |||||||||||| ||||||||||| | ||| ||||||||||||| | || || |||||||||||| |||| ||||||    
T  9900269 aaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgagaaatttttgacaaaa 9900345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 460 - 511
Target Start/End: Complemental strand, 8840067 - 8840016
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaat 511  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  8840067 gactctattaatatttcaaaatagtccctgtctttgtcaaaagtttttcaat 8840016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 449 - 518
Target Start/End: Original strand, 33676560 - 33676631
Alignment:
Q  449 aaattaat-tatgactctattaatattttaaaatagtcactgtctttatcaaaag-tttctcaattagatca 518  Q
    |||||||| ||| ||| |||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||    
T  33676560 aaattaatctataactttattaatattttaaaataatcactgtttttatcaaaagttttttcaattagatca 33676631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 8285286 - 8285232
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||| |||||||||||||||||||||  | ||||| ||||||||||||||||||    
T  8285286 tgactatattaatattttaaaatagtctatatctttgtcaaaagtttctcaatta 8285232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 39643046 - 39643103
Alignment:
Q  456 ttatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||||||||||||  |   |||||||||||||||||| |||||||    
T  39643046 ttatgactctattaatattttaaaatgcttcttgtctttatcaaaagtttatcaatta 39643103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 9637791 - 9637747
Alignment:
Q  471 tattttaaaatagtcactgtctttatcaaaagtttctcaattaga 515  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  9637791 tattttaaaatggtcaatgtctttgtcaaaagtttctcaattaga 9637747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 27354573 - 27354517
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||| |||||| ||||||||| || ||||||||||| |||||| |||||    
T  27354573 tatgactctattcatatttcaaaatagtctctctctttatcaaatgtttcttaatta 27354517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 31065934 - 31065886
Alignment:
Q  548 acttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  31065934 acttaattgagaaacttttgacaaagacaatgactattttgaaatatta 31065886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 33090722 - 33090674
Alignment:
Q  488 tgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgt 536  Q
    ||||||||||||| |||||| | |||||||||||||||||| |||||||    
T  33090722 tgtctttatcaaacgtttctaagttagatcattgtctttatatttttgt 33090674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 513
Target Start/End: Original strand, 9637651 - 9637706
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||| ||||||||||||||||||||||| |||||||| ||| || ||| |||||||    
T  9637651 atgattctattaatattttaaaatagtctctgtctttgtcataaatttttcaatta 9637706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 730
Target Start/End: Original strand, 20399029 - 20399084
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    |||| ||| ||||||||||||| ||| |||||||||||||| || |||||||||||    
T  20399029 actaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagat 20399084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 594
Target Start/End: Original strand, 27354513 - 27354560
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatat 594  Q
    ||||||||| |||||| |||||| |||| |||||||||||||||||||    
T  27354513 gacttaattaagaaacatttgataaagagagagactattttgaaatat 27354560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 31046188 - 31046134
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaag-tttctcaatta 513  Q
    ||||||||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  31046188 gactctattaatattttaaaatagtctatgcctttgtcaaaagttttctcaatta 31046134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 31050998 - 31051052
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||| |||||||| |||||||||   |||||| ||||||||||||||||||    
T  31050998 tgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaatta 31051052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 718
Target Start/End: Original strand, 4902256 - 4902377
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 697  Q
    |||||||||||| ||| | | | ||| ||| |||||||||||||| ||  |||  | ||||||||||||| ||||| |||| ||||||||||| ||| ||    
T  4902256 aaagtttctcaattaggtttatatctttatgtttttgtcacatgatgatggaccaatttgagaaacttttgacaaacactactttaaaatattcataaaa 4902355  T
Q  698 tcaa-ggactaatttgagagtg 718  Q
    ||||  |||| |||||||||||    
T  4902356 tcaatagacttatttgagagtg 4902377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 596
Target Start/End: Original strand, 8285228 - 8285277
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||||||||||||||  |||| | |||||||||| ||||||||    
T  8285228 gacttaattgagaaacttttgacaaagatatagactattttaaaatatta 8285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 461 - 624
Target Start/End: Original strand, 845021 - 845187
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaattgag 558  Q
    ||||||||||||||| |||||||||  ||||||| ||||| ||||||||||| |||| |||||| |||||||||||| |||||  ||  |||||||||||    
T  845021 actctattaatatttcaaaatagtccttgtctttgtcaaatgtttctcaattggatctttgtctctatgtttttgtcacatgatgagacacttaattgag 845120  T
Q  559 aaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtct 624  Q
    |||||| |||  |||||| | | ||||||||||||||||| |||||||||||| || || |||||||    
T  845121 aaacttctgacaaagacaaatattattttgaaatattatcaaaagtttctcaattaaatatttgtct 845187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 465 - 715
Target Start/End: Complemental strand, 15395471 - 15395209
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattgagaaac 562  Q
    |||||||||||||||||||| ||||| ||| |||||||||| |||||||| ||   |||| |||||||||||  |||  |  || |||||||||||||||    
T  15395471 tattaatattttaaaatagttactgtttttgtcaaaagtttttcaattaggtctccgtctctatgtttttgttacatagcgaaacacttaattgagaaac 15395372  T
Q  563 ttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactaga-tc-tttgtctatatatttttgtcacatgacgagtgacttaattga 659  Q
    ||||||| ||||||   |||| ||||||||||| |||||  |||||||| |||| || | | ||||| | ||||| |||||| ||||| |||||||||||    
T  15395371 ttttgataaagacatgaactactttgaaatattgtcaaatttttctcaattagactcatgtctctatgtttttttttcacataacgagggacttaattga 15395272  T
Q  660 gaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgaga 715  Q
    |||  ||||||||||       |||||||||||||||||||||| |||  |||||||||||||    
T  15395271 gaattttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 442 - 549
Target Start/End: Original strand, 38783905 - 38784013
Alignment:
Q  442 cactttcaaattaatt-atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgca 540  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| | | |||||||| ||    
T  38783905 cactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagtttcttaattagatcattgtctctgtatttttgtcaca 38784004  T
Q  541 tgacaagac 549  Q
     ||||||||    
T  38784005 cgacaagac 38784013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 447 - 543
Target Start/End: Complemental strand, 7790471 - 7790375
Alignment:
Q  447 tcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatga 543  Q
    |||||||| |||||||||||||||||||| ||| ||||  || ||||||||||||||||||||||||| || ||||| |||| |||||||| |||||    
T  7790471 tcaaattagttatgactctattaatatttcaaattagtttctatctttatcaaaagtttctcaattaggtctttgtcattatatttttgtcacatga 7790375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 424 - 596
Target Start/End: Complemental strand, 10595585 - 10595411
Alignment:
Q  424 gtctatgtctttataacacactttcaaattaatt-atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgt 522  Q
    |||||||||||| ||| ||| | ||||||||||  || ||||||||||||||| ||| |||||| ||||||| |||||||||||||||| || ||  | |    
T  10595585 gtctatgtctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttctcaataaggtctattt 10595486  T
Q  523 ctttatgtttttgtcgcatgac--aagacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||| ||||||| ||||||  | ||| ||||||||||||||||||  |  ||| |||||| ||||||||||||    
T  10595485 ctttatg-ttttgtcacatgacgaaggacctaattgagaaacttttgacaataacaaagactagtttgaaatatta 10595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 461 - 595
Target Start/End: Complemental strand, 34835764 - 34835629
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgag 558  Q
    ||||||||||||||||||| ||||| || || ||  |||||||||   |||||| |||  ||||||||||||||||| ||||| ||  |||| |||||||    
T  34835764 actctattaatattttaaattagtccctatcattgccaaaagttttcgaattaggtcac-gtctttatgtttttgtcacatgataaaggactaaattgag 34835666  T
Q  559 aaacttttgatcaagacagagactattttgaaatatt 595  Q
    ||||||||||  ||||||||||||| |||||||||||    
T  34835665 aaacttttgacaaagacagagactagtttgaaatatt 34835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 630 - 729
Target Start/End: Complemental strand, 40649885 - 40649779
Alignment:
Q  630 tttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgactt 722  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||       || ||||| ||||||||||||||| ||| |||||||||||| | ||||    
T  40649885 tttttttcacatgacgagggacttaattgagaaacttttaacaaagacatgtaccattttgaaatattaatagaattaagaactaatttgagaatcactt 40649786  T
Q  723 acaaaga 729  Q
    |||||||    
T  40649785 acaaaga 40649779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 730
Target Start/End: Complemental strand, 38783948 - 38783893
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  38783948 actattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaagat 38783893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 471 - 659
Target Start/End: Original strand, 23399571 - 23399758
Alignment:
Q  471 tattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaaga--cttaattgagaaacttttga 568  Q
    ||||| ||| |||||| ||| ||| |||||||||||||||||||| | || ||| ||||||||| |  || ||   ||  ||||||||||| ||||||||    
T  23399571 tatttcaaattagtcattgtttttgtcaaaagtttctcaattagaacgttatctctatgtttttataacacgatgggatacttaattgagagacttttga 23399670  T
Q  569 tcaagacagagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattga 659  Q
      |||||| |  ||||||||||||||||||||| ||||| ||| |||| || | ||||| |  |||||||||||||||| ||||||||||||    
T  23399671 caaagacata--ctattttgaaatattatcaaaagtttcacaattagacctctctctatgt--ttttgtcacatgacgattgacttaattga 23399758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 596
Target Start/End: Complemental strand, 40649946 - 40649817
Alignment:
Q  469 aatattttaaaatagtcactgtctttatcaaaagtttctcaattaga-tcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttt 565  Q
    ||||||| |||||||||| ||||||| |||||||||||| ||||||| ||| ||| | ||||||||| || |||||| |  |||||||||||||||||||    
T  40649946 aatatttcaaaatagtcattgtctttgtcaaaagtttcttaattagactca-tgtttctatgtttttttcacatgacgagggacttaattgagaaacttt 40649848  T
Q  566 tgatcaagacagagactattttgaaatatta 596  Q
    | |  ||||||   || ||||||||||||||    
T  40649847 taacaaagacatgtaccattttgaaatatta 40649817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 6219662 - 6219711
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  6219662 tattaatattttaaattagtcactgtctttgtcaaaaatttctcaattag 6219711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 536
Target Start/End: Original strand, 27293311 - 27293388
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgt 536  Q
    ||||||||||||||||| ||| ||||   | |||||  |||||||||||||||||| || ||||||||||||||||||    
T  27293311 tgactctattaatatttcaaattagttcttatctttgccaaaagtttctcaattaggtctttgtctttatgtttttgt 27293388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 666
Target Start/End: Original strand, 845062 - 845126
Alignment:
Q  602 gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaactt 666  Q
    ||||||||| | ||||||||||| ||| |||||||||||||| |||  |||||||||||||||||    
T  845062 gtttctcaattggatctttgtctctatgtttttgtcacatgatgagacacttaattgagaaactt 845126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 513
Target Start/End: Original strand, 15395222 - 15395278
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||    
T  15395222 tatgactctattaatattttaaaatagtctctgtctttgttaaaaaattctcaatta 15395278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 675
Target Start/End: Complemental strand, 30570243 - 30570167
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 675  Q
    ||||||| |||| ||||||  ||||| ||| ||||||||| || |||| ||||||||||||||||||||| ||||||    
T  30570243 aaagtttatcaattagatcgctgtctttatgtttttgtcatataacgaatgacttaattgagaaacttttgacaaaa 30570167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 568
Target Start/End: Complemental strand, 30570270 - 30570172
Alignment:
Q  471 tattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattgagaaacttttga 568  Q
    ||||||||| |||||| | | ||| |||||||||| |||||||||||  ||||||||||||||||||  || ||  | ||||||||||||||||||||||    
T  30570270 tattttaaattagtca-tatttttgtcaaaagtttatcaattagatcgctgtctttatgtttttgtcatataacgaatgacttaattgagaaacttttga 30570172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 674
Target Start/End: Complemental strand, 7790419 - 7790344
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||| ||| |||| |||| | |||||||| |||||    
T  7790419 aaagtttctcaattaggtctttgtcattatatttttgtcacatgatgagggactaaattaaaaaacttttgacaaa 7790344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 46410873 - 46410826
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtt 504  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  46410873 tatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 4066936 - 4066986
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctca 509  Q
    |||||||||||||| || ||||| |||||||||||| ||||||||||||||    
T  4066936 tgactctattaataattcaaaatggtcactgtctttgtcaaaagtttctca 4066986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 38576621 - 38576575
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  38576621 aaatattaatagaatcaaagactaatttgagaatgatttacaaagat 38576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 597
Target Start/End: Original strand, 46410814 - 46410863
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatattat 597  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  46410814 gacttaatcgagaa-cttttgataaagacagagactattttgaaatattat 46410863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 655
Target Start/End: Complemental strand, 12951755 - 12951699
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaa 655  Q
    |||||||||||| |||||| | ||||  ||||||||||| |||||||||||||||||    
T  12951755 aaagtttctcaattagatcatagtctcaatatttttgtcgcatgacgagtgacttaa 12951699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 12951758 - 12951710
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    |||||||||||||||||||||||| ||||  || |||||||||||||||    
T  12951758 tcaaaagtttctcaattagatcatagtctcaatatttttgtcgcatgac 12951710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 513
Target Start/End: Complemental strand, 1818444 - 1818377
Alignment:
Q  447 tcaaattaat-tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||| | ||||||||||||||||||||||||||  |||| ||||| ||| ||||||| ||||    
T  1818444 tcaaattaatatctgactctattaatattttaaaatagtttctgtttttattaaatgtttctcgatta 1818377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 596
Target Start/End: Original strand, 7790399 - 7790450
Alignment:
Q  545 aagacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||| ||||||||||||||||||| |||| ||| |||| ||||||||||||    
T  7790399 aagacctaattgagaaacttttgataaagatagaaactaatttgaaatatta 7790450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 729
Target Start/End: Original strand, 10377569 - 10377623
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||| ||| ||||||||||||| |||| ||||||||||| | |||||||||||||    
T  10377569 actaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaaga 10377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 15115628 - 15115682
Alignment:
Q  34 tcctaatctaatattttttctgctggttaggatccattgtgattttaataaattc 88  Q
    ||||| ||||| |||| ||  |||||||||||| |||||||||||||||||||||    
T  15115628 tcctattctaacatttcttgcgctggttaggattcattgtgattttaataaattc 15115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 15140144 - 15140198
Alignment:
Q  34 tcctaatctaatattttttctgctggttaggatccattgtgattttaataaattc 88  Q
    ||||| ||||| |||| ||  |||||||||||| |||||||||||||||||||||    
T  15140144 tcctattctaacatttcttgcgctggttaggattcattgtgattttaataaattc 15140198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 596
Target Start/End: Original strand, 17347223 - 17347273
Alignment:
Q  546 agacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||| | ||||||  |||||||||| |||||||||||||||    
T  17347223 agacttaattgagagatttttgacaaagacagagattattttgaaatatta 17347273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 729
Target Start/End: Complemental strand, 28504767 - 28504713
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||| ||| ||||||||||||| |||  ||||||||||||| |||||||||||||    
T  28504767 actagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaaga 28504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 664
Target Start/End: Original strand, 40649902 - 40650016
Alignment:
Q  551 taattgagaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtg 649  Q
    ||||| ||||||||||||  ||||||  ||||||||||||||||| || ||||||| |||| ||||    ||| | ||| ||||| |||||||||||| |    
T  40649902 taattaagaaacttttgacaaagacaatgactattttgaaatattgtcaaaagtttatcaattagactcatgtttctatgtttttttcacatgacgagag 40650001  T
Q  650 acttaattgagaaac 664  Q
    | | |||||||||||    
T  40650002 attcaattgagaaac 40650016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 596
Target Start/End: Complemental strand, 46410735 - 46410685
Alignment:
Q  546 agacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||| || ||||||||||  ||||| ||||||||||||||||||||    
T  46410735 agacttaatcgaaaaacttttgacaaagactgagactattttgaaatatta 46410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 599 - 730
Target Start/End: Original strand, 10524983 - 10525115
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-actattttaaaatattaatagaa 697  Q
    |||||||||||| ||||||  | ||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| |||| ||| ||||||||||||      
T  10524983 aaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaagactagtttgaaatattaataggg 10525082  T
Q  698 tcaaggactaatttgagagtgacttacaaagat 730  Q
    ||  |||| ||||||||||||||||||||||||    
T  10525083 tcggggacaaatttgagagtgacttacaaagat 10525115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 458 - 596
Target Start/End: Original strand, 12427863 - 12428003
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaatt 555  Q
    |||||||||||||||||||||| |||||| | |||||  ||||| ||||||| |||| |||||||||||||||||||||| ||||||   ||||  ||||    
T  12427863 atgactctattaatattttaaattagtcattatctttgccaaaaatttctcatttaggtcattgtctttatgtttttgtcacatgacgagagaccaaatt 12427962  T
Q  556 gagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    || ||||||||||  ||||||  ||||| ||||||||||||    
T  12427963 gaaaaacttttgacaaagacatggactagtttgaaatatta 12428003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 537
Target Start/End: Complemental strand, 32296486 - 32296396
Alignment:
Q  447 tcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    |||||||| | ||||||||| ||||||||||||| | ||  | ||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  32296486 tcaaattagtgatgactctagtaatattttaaaacaatctatatctttgtcaaaagtttttcaattagatcattgtctctatgtttttgtc 32296396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 42709949 - 42710002
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  42709949 gactctattaatattttaaaatagtcaatgtctttgtcaaaagtttctcaatta 42710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 41008985 - 41008915
Alignment:
Q  445 tttcaaattaat-tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||| | ||||||||||||||||||||||||||| || ||||| | |||||||||||||||||    
T  41008985 tttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttctcaattag 41008915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 10524980 - 10525054
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttga 568  Q
    ||||||||||||||||||||||  | |||||||||||||||| |||||| |  ||| ||||||||||||||||||    
T  10524980 tcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaacttttga 10525054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 674
Target Start/End: Complemental strand, 32296434 - 32296359
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    ||||||| |||| |||||| |||||| ||| ||||||||||| || || ||| |||||||||||||||||||||||    
T  32296434 aaagtttttcaattagatcattgtctctatgtttttgtcacacgatgaatgatttaattgagaaacttttaacaaa 32296359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 615
Target Start/End: Original strand, 42710041 - 42710106
Alignment:
Q  551 taattgagaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactaga 615  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||||| |||||||||||| ||||    
T  42710041 taattgagaaacttttgacaaagacttagactattttgaaatattatcaaaagtttctcaattaga 42710106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 564
Target Start/End: Original strand, 16953226 - 16953305
Alignment:
Q  487 ctgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaactt 564  Q
    |||||||| |||||||||| ||||||||||   |||||||||||||||||  |||||| |  ||||||||||||||||||    
T  16953226 ctgtctttgtcaaaagtttgtcaattagattcatgtctttatgtttttgttacatgacgatggacttaattgagaaactt 16953305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 544
Target Start/End: Original strand, 30935240 - 30935324
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    |||||||||||||||| ||| ||||   | ||||| |||||||||| ||| ||||||| || |||||||||||||||| ||||||    
T  30935240 gactctattaatatttcaaactagttcatatctttgtcaaaagtttttcacttagatccttatctttatgtttttgtcacatgac 30935324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 596
Target Start/End: Complemental strand, 42710086 - 42709957
Alignment:
Q  468 taatattttaaaatagtcactgtctttatcaaaagtttctcaattaga-tcattgtctttatgtttttgtcgcatgacaag--acttaattgagaaactt 564  Q
    |||||||| |||||||||   |||||| |||||||||||||||||||| |||| || | ||||||||| ||  ||||| ||  |||||||||||||||||    
T  42710086 taatatttcaaaatagtctaagtctttgtcaaaagtttctcaattagactcat-gtttctatgttttt-tcatatgacgagggacttaattgagaaactt 42709989  T
Q  565 ttgatcaagacagagactattttgaaatatta 596  Q
    ||||  ||||||  ||||||||| ||||||||    
T  42709988 ttgacaaagacattgactattttaaaatatta 42709957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5893369 - 5893444
Alignment:
Q  11 ctttgtatgtt-ctattttgcgactcctaatctaatattttttctgctggttaggatccattgtgattttaataaa 85  Q
    ||||||||||| ||| ||| ||||||||| |||| ||||  || ||||||||||||| ||||||||||||||||||    
T  5893369 ctttgtatgttgctactttacgactcctattctagtattccttgtgctggttaggattcattgtgattttaataaa 5893444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 687 - 730
Target Start/End: Complemental strand, 16808098 - 16808055
Alignment:
Q  687 tattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16808098 tattaatagaatcgaggactaatttgagagttacttacaaagat 16808055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 724
Target Start/End: Complemental strand, 41008852 - 41008801
Alignment:
Q  673 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttac 724  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  41008852 aaactattttaaaatattaatagaatcacagactagtttgagaatgacttac 41008801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 729
Target Start/End: Complemental strand, 12427889 - 12427835
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||    
T  12427889 actaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaaga 12427835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 696
Target Start/End: Complemental strand, 33384233 - 33384106
Alignment:
Q  576 agagactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||||||||||| | ||| ||||||| | |||||   ||| | ||| ||||| |||||||| || |||||||||||||||||||||||| ||    
T  33384233 agagactattttgaaatattgttaaaagtttctcgattagattcatgttt-tatgtttttatcacatgatgaatgacttaattgagaaacttttaacgaa 33384135  T
Q  675 -------actattttaaaatattaataga 696  Q
           ||||||||||||||||||||||    
T  33384134 gacatagactattttaaaatattaataga 33384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 544
Target Start/End: Complemental strand, 35661011 - 35660930
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac 544  Q
    ||||||||||||| ||| ||||   ||||||| | ||||||||||||||||||||  | | |||||||||||||| ||||||    
T  35661011 tctattaatatttcaaattagttcttgtctttgttaaaagtttctcaattagatcgctctttttatgtttttgtcacatgac 35660930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 33384104 - 33384156
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||||||||||||  ||||||  | ||||||||||||||||    
T  33384104 actctattaatattttaaaatagtctatgtcttcgttaaaagtttctcaatta 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 603
Target Start/End: Original strand, 6017 - 6072
Alignment:
Q  548 acttaattgagaaacttttgatcaagacagagactattttgaaatattatcaaagt 603  Q
    |||||| |||||||| |||||| |||||| |||||| |||||||||||| ||||||    
T  6017 acttaactgagaaacgtttgataaagacaaagactaatttgaaatattaacaaagt 6072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 729
Target Start/End: Original strand, 43669488 - 43669540
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    |||||||||||||||||||||| |||  ||||||||||| |||| ||||||||||    
T  43669488 actattttaaaatattaatagagtca--gactaatttgaaagtggcttacaaaga 43669540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 546
Target Start/End: Complemental strand, 47589529 - 47589490
Alignment:
Q  507 tcaattagatcattgtctttatgtttttgtcgcatgacaa 546  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  47589529 tcaattagatcatggtctttatgtttttgtcacatgacaa 47589490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 517
Target Start/End: Complemental strand, 5964282 - 5964225
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatc 517  Q
    |||||| ||||||  | ||||| |||||||||||||||||| |||||||| |||||||    
T  5964282 gactcttttaataactcaaaatggtcactgtctttatcaaacgtttctcagttagatc 5964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 729
Target Start/End: Complemental strand, 16810495 - 16810450
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||| | ||  ||||||||||||||||||||||||||||    
T  16810495 aaatattaatatagtcggggactaatttgagagtgacttacaaaga 16810450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 33384160 - 33384111
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    |||||||||||||||||||| |  |||||| |||||||||| ||||||||    
T  33384160 gacttaattgagaaacttttaacgaagacatagactattttaaaatatta 33384111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 47718874 - 47718841
Alignment:
Q  54 tgctggttaggatccattgtgattttaataaatt 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  47718874 tgctggttaggattcattgtgattttaataaatt 47718841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 419 - 729
Target Start/End: Complemental strand, 21394578 - 21394256
Alignment:
Q  419 atttagtctatgtctttataacacactttcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatca 518  Q
    |||| |||| ||||||| |||  |||| |||||||| |   |||| ||||||||||  ||||||  | || ||||| |||| |||||||||||||||||     
T  21394578 atttggtctgtgtctttgtaagtcactctcaaattagtcccgactttattaatattgaaaaataacctctatctttgtcaatagtttctcaattagatcc 21394479  T
Q  519 ttgtctttatgtttttgtcgcatgacaag--acttaattgagaaacttttgatcaagacagagactattttgaaatattatcaaa-gtttctcaactaga 615  Q
     | ||| ||||||||| || |||||| ||  ||||||||||||||||||| |      || |||||||||||||||||| ||||| ||||||||| || |    
T  21394478 ct-tctctatgtttttatcacatgacgaggtacttaattgagaaacttttaa------caaagactattttgaaatattgtcaaaagtttctcaattaca 21394386  T
Q  616 tctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa----------------actattttaaaatattaatagaatc 699  Q
    ||  |||||   | |||||||||||||||||| ||| |||||||||||||||| |||||                |||||||||||||||||||||| |     
T  21394385 tcactgtctcggtctttttgtcacatgacgagggacataattgagaaacttttgacaaaagagagagagagagagactattttaaaatattaatagagtt 21394286  T
Q  700 aaggactaatttgagagtgacttacaaaga 729  Q
    || |||||||||||||||| ||||||||||    
T  21394285 aatgactaatttgagagtggcttacaaaga 21394256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 443 - 668
Target Start/End: Complemental strand, 32520227 - 32519993
Alignment:
Q  443 actttcaaattaattatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatg 542  Q
    ||||| |||||| || | |||||||||||||||||||||||||  ||| || ||||| ||||| ||||||| ||| || ||||| | |||||||| ||||    
T  32520227 acttttaaattagttttaactctattaatattttaaaatagtctatgttttaatcaacagtttgtcaattaaatctttatctttgtatttttgtcacatg 32520128  T
Q  543 acaag--acttaattgagaaacttttgatcaagac--aga----gactattttgaaatattat-caaagtttctcaactagatctttgtctatatatttt 633  Q
    || ||  |||||||||| ||||||||||  |||||   ||    ||||| |||||||||||||  ||| |||| ||| || |||| ||||| ||||||||    
T  32520127 acgagacacttaattgaaaaacttttgacaaagactacgactacgactactttgaaatattataaaaaatttcacaattaaatctatgtctctatatttt 32520028  T
Q  634 tgtcacatgacgagtgacttaattgagaaactttt 668  Q
    ||| |||||| ||  ||||||||| ||||||||||    
T  32520027 tgttacatgatgaaagacttaattaagaaactttt 32519993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 460 - 596
Target Start/End: Complemental strand, 5656625 - 5656490
Alignment:
Q  460 gactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattga 557  Q
    |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||| || ||   ||||||||| ||||||||||| |  ||| ||| |||    
T  5656625 gactatattaatattttaaactagtctctgtctttgttaaaagtttctcaattaggtcttt---tttatgtttctgtcgcatgacgagggacctaaatga 5656529  T
Q  558 gaaacttttgatcaagacagagactattttgaaatatta 596  Q
     ||||||||||| |||||| | | || ||||||||||||    
T  5656528 aaaacttttgataaagacataaattagtttgaaatatta 5656490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 21969174 - 21969228
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  21969174 tgactctattaatattttaaaataaactctgtctttatcaaaagtttctcaatta 21969228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 17437776 - 17437699
Alignment:
Q  461 actctattaatattttaaaa-tagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    ||||||||||||||| |||| ||||  |||||||| | |||||||||||||||||||| |||||| ||||||||||||    
T  17437776 actctattaatatttcaaaaatagtttctgtctttgttaaaagtttctcaattagatctttgtctctatgtttttgtc 17437699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 578 - 730
Target Start/End: Original strand, 8592162 - 8592320
Alignment:
Q  578 agactattttgaaatattatcaaa-gtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa-- 674  Q
    ||||||||||||||||||| |||| |||| || | |||||||| |||| ||| ||||||||| |||||||  ||||||||||| |||||||| |||||      
T  8592162 agactattttgaaatattagcaaaagtttttcgattagatctt-gtctctatgtttttgtcatatgacgatggacttaattgaaaaacttttgacaaaga 8592260  T
Q  675 ----actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
        | ||||||||||| ||||| || |||   |||||||| ||||||||| ||||||||    
T  8592261 taagattattttaaaatgttaattgagtcagaaactaatttaagagtgactcacaaagat 8592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 537
Target Start/End: Complemental strand, 19122051 - 19121955
Alignment:
Q  442 cactttcaaattaat-tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtc 537  Q
    ||||||||||||| | ||||||||||||||||||| ||| ||||   ||||||| | | ||||||||||||||||| |||||  |||||||||||||    
T  19122051 cactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttctcaattagattattgttgttatgtttttgtc 19121955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 470 - 534
Target Start/End: Original strand, 26330227 - 26330291
Alignment:
Q  470 atattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgttttt 534  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||  ||| | |||||||||    
T  26330227 atattttaaaatagtcaatgtctttgtcaaaagtttctcaattagatccatgtttctatgttttt 26330291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 568
Target Start/End: Original strand, 23765853 - 23765923
Alignment:
Q  500 aagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttga 568  Q
    |||||| |||||||| |||||||||||||||||||||| ||||| ||  ||||||||||||||| ||||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacatgataagggacttaattgagaaatttttga 23765923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 543
Target Start/End: Complemental strand, 3960902 - 3960816
Alignment:
Q  457 tatgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatga 543  Q
    ||||||||||||||||||||||| |||||  ||| ||| ||||||||||||| ||||| |   |||||| ||||||||||| |||||    
T  3960902 tatgactctattaatattttaaattagtccttgtgtttgtcaaaagtttctcgattaggtttctgtcttcatgtttttgtcacatga 3960816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 659
Target Start/End: Complemental strand, 17437737 - 17437677
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattga 659  Q
    |||||||||||| ||||||||||||| ||| |||||||||||| | ||| |||||||||||    
T  17437737 aaagtttctcaattagatctttgtctctatgtttttgtcacataaggagggacttaattga 17437677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 488 - 596
Target Start/End: Complemental strand, 17333442 - 17333334
Alignment:
Q  488 tgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaa--gacttaattgagaaacttttgatcaagacagagactatt 585  Q
    ||||||| ||||||||||||||||||||||  |||||||||| ||||||  |||||| |  ||| ||||||||| ||||||||  ||||| ||| ||| |    
T  17333442 tgtctttgtcaaaagtttctcaattagatctctgtctttatg-ttttgtgccatgacgagggacctaattgagatacttttgacaaagac-gaggctagt 17333345  T
Q  586 ttgaaatatta 596  Q
    |||||||||||    
T  17333344 ttgaaatatta 17333334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 13032411 - 13032358
Alignment:
Q  34 tcctaatctaatattttttctgctggttaggatccattgtgattttaataaatt 87  Q
    ||||| ||||| |||| || ||||||||||||| ||||||||||||||||||||    
T  13032411 tcctattctaacatttcttgtgctggttaggattcattgtgattttaataaatt 13032358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 730
Target Start/End: Original strand, 19122006 - 19122063
Alignment:
Q  673 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    |||||| ||| ||||||||||||| |||  ||||||||||| ||||||||||||||||    
T  19122006 aaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaagat 19122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 21969232 - 21969183
Alignment:
Q  547 gacttaattgagaaacttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  21969232 gacttaattgagaaacttttgataaagacagagtttattttaaaatatta 21969183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 727
Target Start/End: Original strand, 26330338 - 26330391
Alignment:
Q  674 aactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||||||||||||||||||| |||| ||||||||||| | | |||||||||    
T  26330338 aactattttaaaatattaatagagtcaatgactaatttgataatcacttacaaa 26330391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 674
Target Start/End: Complemental strand, 32520169 - 32520096
Alignment:
Q  601 agtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    ||||| |||| || |||||| ||| | ||||||||||||||||||||  |||||||||| |||||||| |||||    
T  32520169 agtttgtcaattaaatctttatctttgtatttttgtcacatgacgagacacttaattgaaaaacttttgacaaa 32520096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 32942442 - 32942389
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||||||||| || |||  |||||||||| ||||||||||||||||    
T  32942442 actctattaatattttaatatggtctatgtctttatcgaaagtttctcaattag 32942389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 675
Target Start/End: Original strand, 20832519 - 20832595
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa 675  Q
    |||||||||||| ||| ||||||| | ||| |||| |||| |||||||||||| ||||||| ||||| || ||||||    
T  20832519 aaagtttctcaattaggtctttgtgtttatgttttggtcatatgacgagtgacctaattgataaactattgacaaaa 20832595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 674
Target Start/End: Original strand, 3889973 - 3890048
Alignment:
Q  599 aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaa 674  Q
    |||||||||||| ||| || ||||||  || |||||||||||  ||||| ||| |||||||||||||||| |||||    
T  3889973 aaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaa 3890048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 722
Target Start/End: Complemental strand, 16710491 - 16710444
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgactt 722  Q
    |||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  16710491 actattttaaaatattaatagagtcaaagtctaatttgaaagtgactt 16710444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 513
Target Start/End: Original strand, 17437555 - 17437610
Alignment:
Q  458 atgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||||||||||| | ||  |||||  ||||||||||||||||||||||||||    
T  17437555 atgactctattaatatatcaatttagtctttgtctttatcaaaagtttctcaatta 17437610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 730
Target Start/End: Original strand, 21969251 - 21969352
Alignment:
Q  636 tcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 728  Q
    ||||||||| ||  |||||||||||| |||||| ||||||       |||||||||||||||||| || |||  ||||||||||||| | ||||||||||    
T  21969251 tcacatgacaagaaacttaattgagagacttttgacaaaaataaaagctattttaaaatattaattgagtcagagactaatttgagattcacttacaaag 21969350  T
Q  729 at 730  Q
    ||    
T  21969351 at 21969352  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 8446978 - 8447028
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||| |||||||||| ||||||| | |||||||| |||||||    
T  8446978 tctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 8455782 - 8455832
Alignment:
Q  463 tctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||||||| |||||||||| ||||||| | |||||||| |||||||    
T  8455782 tctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8455832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 3890079 - 3890026
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattag 514  Q
    |||||||||||||| |||| ||||   ||||||| |||||||||||||||||||    
T  3890079 actctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattag 3890026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 32018611 - 32018644
Alignment:
Q  54 tgctggttaggatccattgtgattttaataaatt 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  32018611 tgctggttaggattcattgtgattttaataaatt 32018644  T

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Target: scaffold0050 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 646
Target Start/End: Original strand, 81947 - 82178
Alignment:
Q  410 aaaccatcgatttagtctatgtctttataacacactttcaaattaattat-gactctattaatattttaaaatagtcactgtctttatcaaaagtttctc 508  Q
    |||||||| |||| |||| ||| ||| ||| ||||| |||||||| | || ||||||||||||||||  ||||| |   | |||||  ||||||||| ||    
T  81947 aaaccatcaatttggtctttgtatttgtaagacactctcaaattagtcattgactctattaatatttccaaataattcatatctttgccaaaagtttatc 82046  T
Q  509 aattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgagaaacttttgatcaagacagagactattttgaaatattatcaaa-gttt 605  Q
    |||||||||  | |||  |||||||| || |||||||||||  |||||||| |||||||       |||| |||||||||||||||||| ||||| ||||    
T  82047 aattagatccatctct--atgtttttatcacatgacaagacacttaattgaaaaacttt-------gacaaagactattttgaaatattgtcaaaagttt 82137  T
Q  606 ctcaactagatctttgtctatatatttttgtcacatgacga 646  Q
    ||||| |||||| ||||||  || |||||||||||||||||    
T  82138 ctcaattagatcattgtctcaatttttttgtcacatgacga 82178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 82128 - 82205
Alignment:
Q  496 tcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac-----aagacttaattgagaaacttttga 568  Q
    |||||||||||||||||||||||||||||  || |||||||| ||||||     ||||||||||| | ||||||||||    
T  82128 tcaaaagtttctcaattagatcattgtctcaatttttttgtcacatgacgacgaaagacttaattaaaaaacttttga 82205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 727
Target Start/End: Complemental strand, 82013 - 81970
Alignment:
Q  684 aaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  82013 aaatattaatagagtcaatgactaatttgagagtgtcttacaaa 81970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 551 - 659
Target Start/End: Complemental strand, 6173 - 6064
Alignment:
Q  551 taattgagaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctttgtctatatatttttgtcacatgacgagtg 649  Q
    ||||||||||||||||||  |||||||||||||||||||| |||| || |||||||||||| ||||    ||| | ||| ||||| |||||||||||| |    
T  6173 taattgagaaacttttgacaaagacagagactattttgaattattgtcaaaagtttctcaattagactcatgtttctatgtttttttcacatgacgaggg 6074  T
Q  650 acttaattga 659  Q
    ||||||||||    
T  6073 acttaattga 6064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 649 - 727
Target Start/End: Original strand, 6210 - 6295
Alignment:
Q  649 gacttaattgagaaacttttaacaaa-------actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||||||||||||||||||||||       |||||||| ||||||||||||| |||| ||||||||||||| | |||||||||    
T  6210 gacttaattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgagaataacttacaaa 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 596
Target Start/End: Original strand, 6137 - 6259
Alignment:
Q  477 aaaatagtcactgtctttatcaaaagtttctcaattaga-tcat-tgtctttatgtttttgtcgcatga-caagacttaattgagaaacttttgatcaag 573  Q
    ||||||||| |||||||| |||||||||||||||||||| |||| | ||| | | ||||| ||  ||||  |||||||||||||||||||||| |  |||    
T  6137 aaaatagtctctgtctttgtcaaaagtttctcaattagactcatgtttctatgtttttttttcatatgatgaagacttaattgagaaacttttaacaaag 6236  T
Q  574 acagagactattttgaaatatta 596  Q
     || | |||||||||||||||||    
T  6237 gcaaaaactattttgaaatatta 6259  T

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Target: scaffold0340 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 465 - 596
Target Start/End: Original strand, 10910 - 11043
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgac--aagacttaattgagaaac 562  Q
    ||||||||||||||||||||   | ||||| |||||||||||||||||| ||   ||| | ||||||||| || || |||   |||||||||||| ||||    
T  10910 tattaatattttaaaatagtttatatctttgtcaaaagtttctcaattaaatttatgtttctatgtttttttcacacgacgagagacttaattgaaaaac 11009  T
Q  563 ttttgatcaagacagagactattttgaaatatta 596  Q
    ||||||| |||||| |||||||||| | ||||||    
T  11010 ttttgataaagacaaagactattttaagatatta 11043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 513
Target Start/End: Complemental strand, 11046 - 10998
Alignment:
Q  465 tattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    ||||||||| |||||||||||  |||||||||||||||||| |||||||    
T  11046 tattaatatcttaaaatagtctttgtctttatcaaaagtttttcaatta 10998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 730
Target Start/End: Complemental strand, 10931 - 10874
Alignment:
Q  673 aaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 730  Q
    |||||||||||||||||||||| |||||  |||||||| |||| | ||||| ||||||    
T  10931 aaactattttaaaatattaataaaatcatagactaattagagaatcacttaaaaagat 10874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 729
Target Start/End: Original strand, 4796 - 4850
Alignment:
Q  675 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||||||||||||||||||  ||||||||||||| | | |||||||||    
T  4796 actattttaaaatattaatagaatcagagactaatttgagaataatttacaaaga 4850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 683 - 729
Target Start/End: Original strand, 11542 - 11588
Alignment:
Q  683 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11542 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 683 - 729
Target Start/End: Original strand, 11907 - 11953
Alignment:
Q  683 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 729  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11907 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 568
Target Start/End: Complemental strand, 12219 - 12110
Alignment:
Q  461 actctattaatattttaaaatagtcactgtctttatcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaagac--ttaattgag 558  Q
    |||| ||||||||||||||||||||  |||| |||||||| |||| ||||||||||   ||| | |||||||||||| | ||| | |||  ||||||||     
T  12219 actcgattaatattttaaaatagtctttgtccttatcaaacgtttttcaattagattcatgtatctatgtttttgtcacgtgatatgacatttaattgaa 12120  T
Q  559 aaacttttga 568  Q
    ||||||||||    
T  12119 aaacttttga 12110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 533
Target Start/End: Original strand, 7561 - 7628
Alignment:
Q  467 ttaatattttaaaatagtcactgt-ctttatcaaaagtttctcaattagatcattgtctttatgtttt 533  Q
    ||||||||| ||| |||||| ||| |||| | ||||||||||||||||| ||||||| ||||||||||    
T  7561 ttaatatttcaaactagtcattgttcttttttaaaagtttctcaattagttcattgtttttatgtttt 7628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Complemental strand, 12047 - 11992
Alignment:
Q  672 aaaactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 727  Q
    ||||||||||||||||||||||| ||| ||  || ||||||||||| |||||||||    
T  12047 aaaactattttaaaatattaataaaattaaaaacaaatttgagagtaacttacaaa 11992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 727
Target Start/End: Original strand, 12080 - 12186
Alignment:
Q  626 tatatttttgtcacatgacgagtgacttaattgagaaacttttaacaaaa-------ctattttaaaatattaatagaatcaaggactaatttgagagtg 718  Q
    |||||||||||||||||||||  ||||||||||| |   |||| ||||||       ||||||||||||||||||| ||| ||||| ||||||  |||||    
T  12080 tatatttttgtcacatgacgaaagacttaattgaaatttttttgacaaaaatagtgactattttaaaatattaatacaatgaaggattaattt--gagtg 12177  T
Q  719 acttacaaa 727  Q
    |||||||||    
T  12178 acttacaaa 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 1943 - 1889
Alignment:
Q  459 tgactctattaatattttaaaatagtcactgtctttatcaaaagtttctcaatta 513  Q
    |||||||| |||||||| |||||||||   |||||| ||||||||||||||||||    
T  1943 tgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaatta 1889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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