View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4507_high_4 (Length: 312)
Name: NF4507_high_4
Description: NF4507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4507_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 50270457 - 50270159
Alignment:
| Q |
12 |
atgatctgaactaattatattaattaccaaaactaactatatttcttaattcttgtgcaatgtgttaaagtagcgtataatgaattaagggatgtaatga |
111 |
Q |
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| T |
50270457 |
atgatctgaactaattatattaattaccaaaactaactatatttcttaattcttgtgcaatgtgttaaagtagcgtataatgaattaagggatgtaatga |
50270358 |
T |
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| Q |
112 |
aaaagaagctatatatcaagacacgggtcctaattaatattcccaattggcacatacattttgcgctggagatacatatgcaaagtgcaaaaatactctt |
211 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50270357 |
aaaagaagctatacatcaagacacgagtcctaattaatattcccaattggcacatacattttgcgctggagatacatatgcaaagtgcaaaaatactctt |
50270258 |
T |
|
| Q |
212 |
tcaatgtaacaagtttgggggcataaaagtggaatataacagcttgtttctgattcctctttctttccctctgcatt----attcatacatgcacggcc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50270257 |
tcaatgtaacaagtttgggggcataaaagtggaatataacagcttgtttctgattcctctttctttccctctgcattattaattcatacatgcacggcc |
50270159 |
T |
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