View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4507_low_10 (Length: 235)
Name: NF4507_low_10
Description: NF4507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4507_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 2131573 - 2131360
Alignment:
| Q |
4 |
gacaaacatattctcatacttgtatatcccttgcaagtgtgagtcttccacatcttatatttaatccatcctttactaagttgaatcaagactttgatac |
103 |
Q |
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| T |
2131573 |
gacaaacatgttctcatacttgtatatcccttgcaagtgtgagtcttccacgtcttatatttaatccatcatttactaagttgaatcaagactttgatac |
2131474 |
T |
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| Q |
104 |
cacttgttggagagtctgaagatcatcgaaaacacaacaaattcgtgaacagggactaccaaaagaccgagacactacacgagtctctcacattttatat |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131473 |
cacttgttggagagtctgaagatcatcggaaacacaacaaattcgtgaacagggactaccaaaagaccgagacactacacgagtctctcacattttatat |
2131374 |
T |
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| Q |
204 |
ttgcaccgccatac |
217 |
Q |
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|||||||||||||| |
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| T |
2131373 |
ttgcaccgccatac |
2131360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 2131348 - 2131196
Alignment:
| Q |
65 |
taatccatcctttactaagttgaatcaagactttgataccacttgttggagagtctgaagatcatcgaaaacacaacaaattcgtgaacagggactacca |
164 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2131348 |
taatccattctttacgaagttgaatcaagactttgataccacttgttggagagtctgaagatcatcggaaacacaacaaattcgtgaagagggactacca |
2131249 |
T |
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| Q |
165 |
aaagaccgagacactacacgagtctctcacattttatatttgcaccgccatac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131248 |
aaagaccgagacactacacgagtctctcacattttatatttgcaccgccatac |
2131196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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