View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4507_low_5 (Length: 268)
Name: NF4507_low_5
Description: NF4507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4507_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 14863555 - 14863360
Alignment:
| Q |
8 |
agcaaaggagaaaacggataccaagaaagacactaactaatatgagcttgatgaagaattggtttaagacagaaaagttgtgttgtttagtccgagtaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14863555 |
agcaaaggagaaaacggataccaagaaagacactaa----tatgagcttgatgaagaattggtttaagacataaaagttgtgttgtttagtccgagtaat |
14863460 |
T |
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| Q |
108 |
atataaaccctacctagttgatggaaatgaaagaattggcaatggaa-ggagtcacaaatcataatttgttgttacatatatgtcaattagcagttacat |
206 |
Q |
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| T |
14863459 |
atataaaccctacctagttgatgaaaatgaaagaattggcaatggaagggagtcacaaatcataatttgttgttacatatatgtcaattagcggttacat |
14863360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 14863321 - 14863273
Alignment:
| Q |
205 |
atatatgttgttttcaaggattttagcagttacatgtatacaaatattt |
253 |
Q |
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| T |
14863321 |
atatatgttgttttcaagggttttagcagttacatctatacaaatattt |
14863273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 38935392 - 38935521
Alignment:
| Q |
124 |
gttgatggaaatgaaagaattggcaatggaaggagtcacaaatcataatttgttgttacatatatgtcaattagcagttacatatatgttgttttcaagg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38935392 |
gttgatggaaatgaaagaattggcaatggaaggagtcacaaatcataatttgttgttacatatatgtcaattagcagttacatatacgttgttttcaagg |
38935491 |
T |
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| Q |
224 |
attttagcagttacatgtatacaaatattt |
253 |
Q |
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| T |
38935492 |
attttagcagttacatgtatacaaatattt |
38935521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 38933255 - 38933356
Alignment:
| Q |
8 |
agcaaaggagaaaacggataccaagaaagacactaactaatatgagcttgatgaagaattggtttaagacagaaaagttgtgttgtttagtccgagtaat |
107 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38933255 |
agcaaaggagaaaacggataccaagaaagacacta----atatgagcttgatgaagaattggtttaagacagaaaagttgtgttgtttagtccgagtaat |
38933350 |
T |
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| Q |
108 |
atataa |
113 |
Q |
| |
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|||||| |
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| T |
38933351 |
atataa |
38933356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 42126861 - 42126739
Alignment:
| Q |
122 |
tagttgatggaaatgaaagaattggcaatggaaggagtcacaaatcataatttgttgttacatatatgtcaattagcagttacatatatgttgttttcaa |
221 |
Q |
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||||||| ||||| ||||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
42126861 |
tagttgaaggaaaagaaagaattggcaggggaaggagtcacaaatcacaattcgcagttacatatatgccaattagcagttacatatgcgttgttttcaa |
42126762 |
T |
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| Q |
222 |
ggattttagcagttacatgtata |
244 |
Q |
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| ||||| |||||||||| |||| |
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| T |
42126761 |
gaattttggcagttacatatata |
42126739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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