View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4509-Insertion-1 (Length: 1018)
Name: NF4509-Insertion-1
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 34079534 - 34078790
Alignment:
| Q |
8 |
ccattgtcgtccataagatcagttggaaggttcttcaaaaaccactcatggtttctaatctctggaatgcttattctctgttgtaaaacagtattagttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34079534 |
ccattgtcgtccataagatcagttggaaggttcttcaaaaaccactcatggtttctaatctctggaatgcttattctctgttgtaaaacagtattagttt |
34079435 |
T |
|
| Q |
108 |
aatgccaccatttttcatacnnnnnnnntggagaaccaagtgtataattgcacatgagtacaacttaaattgtatttgtgttgcaatccttaaaactata |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34079434 |
aatgccaccatttttcatacaaaaaaaa-ggagaaccaagtgtataattgcacatgagtacaacttaaattgtatttgtgttgcaatccttaaaactata |
34079336 |
T |
|
| Q |
208 |
aagaattgcagtggaatacaactgataaggtctcagctaggactgttcatcaatcggttcaggaaggaaaactgggctgagttattgatttgtcccaaat |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34079335 |
aagaattgcagtggaatacaactgttaaggtctcagctaggactgttcatcaatcggttgaggaaggaaaactgggctgagttattgatttgtcccaaat |
34079236 |
T |
|
| Q |
308 |
cgagctgttatgaagtttcggtgcctaggttcaattcaatggttccgaaccgaaactatttttacagaaaatcgaactgcacattttttaaccgaattga |
407 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34079235 |
cgagctgttatgaagcttcagtgcataggttcaattcaatggttccgaaccaaaactatctttacagaaaatcgaactgcacattttttaaccgaattga |
34079136 |
T |
|
| Q |
408 |
ttatttgtgaacggaaatataccaaattgctattattaactgataattaggattgttnnnnnnnnnnnnntcaaaccaaatgaatattaagatagttaaa |
507 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
34079135 |
ttatttgtgaacggaaatatacc-aattgctattattaactgataattaggattggctaaaaaacaaaaatcaaaccaaatgaatattaagattgttaaa |
34079037 |
T |
|
| Q |
508 |
actgcaccgaactgtcaaactaaactgcagttaaacccaactgtcagtcacaattcagttctactcgatgcagtttggtttttagtatctttaaacaatc |
607 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34079036 |
actgcaccgaattgtcaaactaaactgcagttaaacccaactgtcagtcacaattcagttctactcgatgcagtttggtttttagtatctttaaacaatc |
34078937 |
T |
|
| Q |
608 |
ctagccatagttgtagttacgtagcagctgcagaggcataaaaaatgtcgagggtcacgactttaatcgcaaaaaaccttgagggtcacgactttaatcg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34078936 |
ctagccatagttgtagttacgtagcagctgcagaggcataaaaaatgtcgagggtcgcgactttaatcgcaaaaaaccttgagggtcacaactttaatcg |
34078837 |
T |
|
| Q |
708 |
cggttgaagacatttttctaaacctagtgaagcacataagtttcatc |
754 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34078836 |
cggttgaagacatttttctaaacctagtgaagcacataaatttcatc |
34078790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 781 - 1000
Target Start/End: Complemental strand, 34078763 - 34078537
Alignment:
| Q |
781 |
cccacctttgcaggatcagcaacaaaaatccgtgaaatcagatgctggcattcgggagatatatgaacatagtcaggaattgaataatgaacatttaaaa |
880 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078763 |
cccacctttgcaggatcagcaacaaaaatccgtgaaatcagatgctggcattcgggagatatatgaacatagtcaggaattgaataatgaacatttaaaa |
34078664 |
T |
|
| Q |
881 |
t-ctctgcaagaaacatgtaagagttaact-aaaactaattcaatcatactacattgattaat-aaaggggaaatagg-tacattta-tgtcttgctgaa |
975 |
Q |
| |
|
| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
34078663 |
tcctctgcgagaaacatgtaagagttaactaaaaactaattcaatcatactacattgattaataaaaggtgaaataggttacatttattgtcttgcggaa |
34078564 |
T |
|
| Q |
976 |
a-ttttaggct-ctctggatcctcaaa |
1000 |
Q |
| |
|
| ||||||||| ||||||||||||||| |
|
|
| T |
34078563 |
atttttaggctcctctggatcctcaaa |
34078537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 34945897 - 34945948
Alignment:
| Q |
411 |
tttgtgaacggaaatataccaaattgctattattaactgataattaggattg |
462 |
Q |
| |
|
||||||||| ||| |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
34945897 |
tttgtgaaccgaactataccaatttgctattgttaactgataattaggattg |
34945948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 12310904 - 12310835
Alignment:
| Q |
20 |
ataagatcagttggaaggttcttcaaaaaccactcatggtttctaatctctggaatgcttattctctgtt |
89 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| |||||| || |||||||||||||||| |
|
|
| T |
12310904 |
ataagatcagctggaaggttcttcaaaaaccaatcatggtttcgaatctccggcatgcttattctctgtt |
12310835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 382 - 456
Target Start/End: Original strand, 36854680 - 36854754
Alignment:
| Q |
382 |
aactgcacattttttaaccgaattgattatttgtgaacggaaatataccaaattgctattattaactgataatta |
456 |
Q |
| |
|
||||| || ||||| |||||| ||||| ||||||||| ||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
36854680 |
aactgtacttttttgaaccgagctgattctttgtgaaccgaactgtaccaaattgctattcttaactgataatta |
36854754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 14545600 - 14545632
Alignment:
| Q |
432 |
aattgctattattaactgataattaggattgtt |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14545600 |
aattgctattattaactgataattaggattgtt |
14545632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 26935035 - 26935068
Alignment:
| Q |
426 |
ataccaaattgctattattaactgataattagga |
459 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
26935035 |
ataccaaattgcgattattaactgataattagga |
26935068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 456
Target Start/End: Complemental strand, 35034134 - 35034060
Alignment:
| Q |
382 |
aactgcacattttttaaccgaattgattatttgtgaacggaaatataccaaattgctattattaactgataatta |
456 |
Q |
| |
|
||||| || ||||| |||||| ||||| ||||||||| ||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
35034134 |
aactgtacttttttgaaccgagctgattctttgtgaaccgaactgtacaaaattgctattcttaactgataatta |
35034060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University