View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509-Insertion-10 (Length: 202)
Name: NF4509-Insertion-10
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509-Insertion-10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 31734658 - 31734770
Alignment:
| Q |
90 |
gaacccaatttcatattcttggacgatctttccattttctggtacaattgcaacacaaaattttcaccatttttgtgaatctttaaatactgattcatct |
189 |
Q |
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| T |
31734658 |
gaacccaatttcatattcttggacgatttttccattttttggtacaattgcaaaacaaaattttcaccatttttgtgaatctttggatactgattcatct |
31734757 |
T |
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| Q |
190 |
aaacccaatttga |
202 |
Q |
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| T |
31734758 |
aaacccaatttga |
31734770 |
T |
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Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 2183594 - 2183702
Alignment:
| Q |
95 |
caatttcatattcttggacgatctttccattttctggtacaattgcaacacaaaattttcaccatt-tttgtgaatctttaaatactgattcatctaaac |
193 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| || |||||||||| || ||||||||||||||||||| |
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| T |
2183594 |
caatttcatattcttggattatctttgcattttctggtacaattgcaaaacaaaattttcacctttatttgtgaatcgttgaatactgattcatctaaac |
2183693 |
T |
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| Q |
194 |
ccaatttga |
202 |
Q |
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| T |
2183694 |
ccaatttga |
2183702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 45413539 - 45413426
Alignment:
| Q |
90 |
gaacccaatttcatattcttggacgatctttccattttctggtacaattgcaacacaaaattttcaccatt-tttgtgaatctttaaatactgattcatc |
188 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||| || |||||||||| || || |||||||||| |
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| T |
45413539 |
gaactcaatttcatattcttggatgatctttgcattttctggtaaaattgcaaaacaaaattttcacctttatttgtgaatcgttgaacactgattcatt |
45413440 |
T |
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| Q |
189 |
taaacccaatttga |
202 |
Q |
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| T |
45413439 |
taaatccaatttga |
45413426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 6768554 - 6768667
Alignment:
| Q |
90 |
gaacccaatttcatattcttggacgatctttccattttctggtacaattgcaacacaaaattttcaccatt-tttgtgaatctttaaatactgattcatc |
188 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||| || |||||||||| || || ||||||||||| |
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| T |
6768554 |
gaactcaatttcatattcttggacgatctttgcattttctggtaaatttgcaaaacaaaattttcacctttatttgtgaatcgttgaacactgattcatc |
6768653 |
T |
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| Q |
189 |
taaacccaatttga |
202 |
Q |
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| T |
6768654 |
taaacccaaattga |
6768667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 6457878 - 6457992
Alignment:
| Q |
90 |
gaacccaatttcatattcttggacgatctttccattttctggtacaattgc-aacacaaaattttcaccatt-tttgtgaatctttaaatactgattcat |
187 |
Q |
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|||| |||||||||||||||||| |||||| |||||||| |||||||||| || |||||||||||||| || |||||||||| || |||||||||| | |
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| T |
6457878 |
gaactcaatttcatattcttggataatctttgcattttctcgtacaattgcaaaaacaaaattttcacctttatttgtgaatcgttgaatactgatttgt |
6457977 |
T |
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| Q |
188 |
ctaaacccaatttga |
202 |
Q |
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| T |
6457978 |
ctaaacccaatttga |
6457992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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