View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4509-Insertion-2 (Length: 922)

Name: NF4509-Insertion-2
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4509-Insertion-2
NF4509-Insertion-2
[»] chr3 (22 HSPs)
chr3 (7-368)||(1290927-1291288)
chr3 (390-706)||(1290639-1290934)
chr3 (728-920)||(1289797-1289999)
chr3 (600-670)||(5046197-5046267)
chr3 (594-670)||(52925726-52925802)
chr3 (608-670)||(3845241-3845303)
chr3 (608-670)||(34867315-34867377)
chr3 (608-670)||(51285453-51285515)
chr3 (597-670)||(3776433-3776506)
chr3 (587-670)||(1441489-1441572)
chr3 (597-667)||(7717491-7717561)
chr3 (610-668)||(23187545-23187603)
chr3 (477-587)||(31013050-31013159)
chr3 (485-587)||(31708191-31708292)
chr3 (612-670)||(52363959-52364017)
chr3 (601-670)||(584914-584983)
chr3 (597-666)||(5406804-5406873)
chr3 (609-670)||(38022331-38022392)
chr3 (596-669)||(52141362-52141435)
chr3 (594-670)||(7262792-7262868)
chr3 (607-675)||(36239692-36239760)
chr3 (487-541)||(1441361-1441414)
[»] chr8 (22 HSPs)
chr8 (485-580)||(16972016-16972110)
chr8 (486-587)||(32927924-32928024)
chr8 (612-669)||(44141190-44141247)
chr8 (594-670)||(32994339-32994415)
chr8 (597-669)||(39648263-39648335)
chr8 (599-670)||(41614738-41614809)
chr8 (594-670)||(15677913-15677989)
chr8 (597-669)||(24776211-24776283)
chr8 (600-670)||(30251632-30251702)
chr8 (608-670)||(35495154-35495216)
chr8 (610-670)||(34732038-34732098)
chr8 (477-540)||(10368044-10368106)
chr8 (488-587)||(35495022-35495120)
chr8 (608-670)||(4554228-4554290)
chr8 (608-670)||(4554400-4554462)
chr8 (517-583)||(4662886-4662952)
chr8 (608-670)||(4950379-4950441)
chr8 (612-670)||(10367895-10367953)
chr8 (599-640)||(8252721-8252762)
chr8 (486-551)||(18123294-18123358)
chr8 (597-670)||(32100967-32101040)
chr8 (488-577)||(32736504-32736592)
[»] scaffold0168 (1 HSPs)
scaffold0168 (596-670)||(31720-31794)
[»] chr4 (21 HSPs)
chr4 (596-670)||(49138952-49139026)
chr4 (608-670)||(50358143-50358205)
chr4 (612-669)||(50061768-50061825)
chr4 (616-670)||(33843585-33843639)
chr4 (594-670)||(48045816-48045893)
chr4 (594-670)||(2635057-2635133)
chr4 (612-668)||(21691353-21691409)
chr4 (594-669)||(1099731-1099806)
chr4 (610-668)||(20712546-20712604)
chr4 (599-669)||(41058821-41058891)
chr4 (610-670)||(55085133-55085194)
chr4 (610-666)||(471999-472055)
chr4 (610-670)||(43075957-43076017)
chr4 (493-587)||(32818328-32818423)
chr4 (594-665)||(35064962-35065033)
chr4 (594-669)||(45329741-45329816)
chr4 (594-644)||(26617742-26617792)
chr4 (612-670)||(29904126-29904184)
chr4 (612-670)||(33456268-33456326)
chr4 (468-529)||(20712749-20712809)
chr4 (608-641)||(35995151-35995184)
[»] chr7 (12 HSPs)
chr7 (459-584)||(45557400-45557524)
chr7 (592-667)||(38123761-38123836)
chr7 (477-587)||(40491610-40491719)
chr7 (597-670)||(15050187-15050259)
chr7 (597-670)||(45004879-45004952)
chr7 (460-533)||(25156286-25156358)
chr7 (597-645)||(22310784-22310832)
chr7 (594-640)||(12306658-12306704)
chr7 (466-584)||(38123599-38123716)
chr7 (608-641)||(883377-883410)
chr7 (608-641)||(1242706-1242739)
chr7 (460-545)||(33853411-33853495)
[»] chr2 (19 HSPs)
chr2 (609-670)||(7629756-7629817)
chr2 (616-665)||(680420-680469)
chr2 (597-663)||(40582650-40582716)
chr2 (487-551)||(16518846-16518909)
chr2 (607-670)||(3476560-3476623)
chr2 (599-666)||(43717240-43717307)
chr2 (608-670)||(42774964-42775026)
chr2 (587-640)||(15928542-15928595)
chr2 (610-663)||(16013842-16013895)
chr2 (599-640)||(37420317-37420358)
chr2 (610-670)||(3654724-3654784)
chr2 (610-662)||(16519348-16519400)
chr2 (595-651)||(44439163-44439219)
chr2 (608-670)||(2002824-2002886)
chr2 (594-668)||(16518676-16518749)
chr2 (459-540)||(3853932-3854012)
chr2 (466-515)||(30503310-30503359)
chr2 (612-669)||(33047685-33047742)
chr2 (477-510)||(42343796-42343829)
[»] chr6 (23 HSPs)
chr6 (594-670)||(5724745-5724821)
chr6 (587-665)||(25195472-25195550)
chr6 (608-669)||(7262966-7263027)
chr6 (597-670)||(10400814-10400887)
chr6 (592-668)||(34620782-34620858)
chr6 (592-668)||(34748219-34748295)
chr6 (613-670)||(34910897-34910954)
chr6 (594-666)||(33141822-33141893)
chr6 (460-507)||(34911053-34911100)
chr6 (517-587)||(3482078-3482148)
chr6 (608-670)||(24982189-24982251)
chr6 (608-670)||(29240581-29240643)
chr6 (587-670)||(1485254-1485338)
chr6 (582-670)||(7952812-7952900)
chr6 (489-580)||(8854959-8855048)
chr6 (607-670)||(24974109-24974172)
chr6 (594-641)||(33136598-33136645)
chr6 (597-664)||(33997098-33997165)
chr6 (607-669)||(3437011-3437071)
chr6 (596-670)||(4910802-4910876)
chr6 (597-663)||(34063233-34063299)
chr6 (610-667)||(19601714-19601771)
chr6 (596-641)||(26550442-26550487)
[»] chr1 (22 HSPs)
chr1 (594-670)||(15478116-15478192)
chr1 (594-669)||(6041587-6041662)
chr1 (611-670)||(8130852-8130911)
chr1 (485-587)||(34915098-34915199)
chr1 (600-668)||(2099807-2099873)
chr1 (597-666)||(8381882-8381951)
chr1 (491-551)||(27849208-27849267)
chr1 (587-638)||(24587835-24587886)
chr1 (518-587)||(3016194-3016263)
chr1 (617-670)||(6021696-6021748)
chr1 (486-587)||(7524145-7524245)
chr1 (612-669)||(28084021-28084078)
chr1 (610-670)||(20721046-20721106)
chr1 (612-668)||(41516883-41516939)
chr1 (594-670)||(45660864-45660939)
chr1 (451-533)||(5868149-5868231)
chr1 (487-550)||(35961437-35961499)
chr1 (596-639)||(36780234-36780277)
chr1 (612-670)||(15084726-15084784)
chr1 (587-641)||(31117398-31117452)
chr1 (597-666)||(30557414-30557483)
chr1 (594-643)||(37131855-37131904)
[»] chr5 (20 HSPs)
chr5 (608-670)||(15368137-15368199)
chr5 (592-669)||(28973753-28973830)
chr5 (594-670)||(3043119-3043195)
chr5 (620-670)||(37121479-37121529)
chr5 (612-670)||(38845644-38845702)
chr5 (597-668)||(34250469-34250540)
chr5 (596-670)||(29922788-29922862)
chr5 (601-639)||(39514824-39514862)
chr5 (600-641)||(10860192-10860233)
chr5 (596-669)||(39097159-39097232)
chr5 (616-670)||(2973397-2973451)
chr5 (608-670)||(10161720-10161782)
chr5 (608-670)||(10859950-10860012)
chr5 (594-664)||(16016879-16016949)
chr5 (592-670)||(18851195-18851273)
chr5 (596-670)||(22226353-22226427)
chr5 (596-669)||(370827-370900)
chr5 (611-648)||(707596-707633)
chr5 (596-641)||(11911926-11911971)
chr5 (488-529)||(14299416-14299456)
[»] scaffold0314 (1 HSPs)
scaffold0314 (612-668)||(17322-17378)
[»] scaffold0361 (1 HSPs)
scaffold0361 (608-670)||(14242-14304)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 1291288 - 1290927
Alignment:
Q  7 acaaaccaaaaccttcttctcttctcttcttttgtttctgtcaaacactaacttcattcaacaatggagacaccgataccaattgcatggtgggaaaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1291288 acaaaccaaaaccttcttctcttctcttcttttgtttctgtcaaacactaacttcattcaacaatggagacaccgataccaattgcatggtgggaaaaat 1291189  T
Q  107 gggtccaagaggcactaacaacccttgattctctcagagtgcttcgatctcttagacccatttctctccaacgtgtggtagatgatcatgcgtttcaagt 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1291188 gggtcgaagaggcactaacaacccttgattctctcagagtgcttcgatctcttagacccatttgtctccaacgtgtggtagatgatcatgcgtttcaagt 1291089  T
Q  207 gtttgatgaaatgcatcaatgggaccgttcttctgttgaagttgaaattagtgaaacaacatttaggaaatggatgcatgataccccaagttcaggtata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1291088 gtttgatgaaatgcatcaatgggaccgttcttctgttgaagttgaaattggtgaaacaacatttaggaaatggatgcatgataccccaagttcaggtata 1290989  T
Q  307 ctatccctttgcactacacnnnnnnngttgtatgtttttgcacgtgcaactatgaaggacaa 368  Q
    |||||||||||||||||||       |||||||||||||||| ||||||||||||| |||||    
T  1290988 ctatccctttgcactacactttttttgttgtatgtttttgcatgtgcaactatgaatgacaa 1290927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 390 - 706
Target Start/End: Complemental strand, 1290934 - 1290639
Alignment:
Q  390 aatgacaacacataaacacctataatagtttgagaaataacataattcaatgtagtgtatggtgataaagaattggttttgagtgagttgatttcgacta 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  1290934 aatgacaacacataaacacctataatagtttgagaaataacataattcaatgtagtgtatggtgataaagaattggttttgagt---------------- 1290851  T
Q  490 aaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaact 589  Q
         ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1290850 -----gagttgaaggtaaaatgatttggtgtttgaatacattcatgtaaaagccagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaact 1290756  T
Q  590 caatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatacgcgtaattacatgtctcgg 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1290755 caatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacatacgcgtaattacatgtctcgg 1290656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 728 - 920
Target Start/End: Complemental strand, 1289999 - 1289797
Alignment:
Q  728 ttagaggcagaataaggtcaagaaaaaagtgtaattaagatagatttagaggctaattgtttaatatagacatgatttacgatataacatt--------- 818  Q
    |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  1289999 ttagaggcagtagaaggtcaagaaaaa-gtgtaattaagatagatttagaggctaattgtttaatatagacatgatttacgatataacattatgatgtca 1289901  T
Q  819 --tgattcatatagccaaccgagataagacttggctgttgttgcaattatcatgcaaatataatcgttaaataaagaagatttggtttaacctttagatt 916  Q
      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1289900 tttgattcatatagccaaccgagataagacttggttgttgttgcaattatcatgcaaatataatcgttaaataaagaagatttggtttaacctttagatt 1289801  T
Q  917 ccac 920  Q
    ||||    
T  1289800 ccac 1289797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 5046197 - 5046267
Alignment:
Q  600 caaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||||| | ||||||||||||||||||    
T  5046197 caaacatatcaaaatcaattttacacctctagaatcaacattagctcctccaaaagtggaaccaaacatac 5046267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 52925726 - 52925802
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||  |||||| | |||||||||| |||||||    
T  52925726 agcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatac 52925802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 3845241 - 3845303
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||||||||||||||||| | | ||| | ||||||||||||||||||    
T  3845241 tcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacatac 3845303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 34867315 - 34867377
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||| ||||||||||||  ||| || || ||||||||||||||||||    
T  34867315 tcaaaatcaattctacacctgtagaatcaatttcggcttctgtaaaagtggaaccaaacatac 34867377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 51285515 - 51285453
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||||||||||||| |||||  ||| ||| | ||||||||||||||||||    
T  51285515 tcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacatac 51285453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 3776506 - 3776433
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||  ||||||||||||||||||||||| || |||||||  |||||| | ||||||||||||| ||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatac 3776433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 1441489 - 1441572
Alignment:
Q  587 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||| || |||||||||  ||||| ||||||||||||||||||||  |||||| | | ||| | ||||||||||||||||||    
T  1441489 actcaaaagaaaccaaacatgtcaaactcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 1441572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 667
Target Start/End: Original strand, 7717491 - 7717561
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaaca 667  Q
    |||||||||  |||||||||| |||| ||||||| ||||||||||||||| |  | |||||||||||||||    
T  7717491 aaccaaacatgtcaaaatcaactctaaacctctacaatcaattttagctcatgcaaaagtggaaccaaaca 7717561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 668
Target Start/End: Complemental strand, 23187603 - 23187545
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||||||||| ||||||| |||||||| ||||||||| | || ||||||||||||||||    
T  23187603 aaaatcaattttacacctttagaatcagttttagctcatgtaaaagtggaaccaaacat 23187545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 587
Target Start/End: Complemental strand, 31013159 - 31013050
Alignment:
Q  477 ttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaat 576  Q
    |||||| ||||||||||||||||| || |||| |||||| ||||||| || |||||| ||| |||  |||||||   ||||| ||||||||| ||| |||    
T  31013159 ttgattccgactaaaagtgagttgtagataaagtgattt-gtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaat 31013061  T
Q  577 tctagaatcaa 587  Q
    |||||| ||||    
T  31013060 tctagattcaa 31013050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 587
Target Start/End: Original strand, 31708191 - 31708292
Alignment:
Q  485 gactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaat 584  Q
    ||||||||||||||||  | |||| || |||| |||||| ||||||||| |||||||  |||||||   ||||| ||||||||| ||| |||||||||||    
T  31708191 gactaaaagtgagttgctgataaagtggtttg-tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T
Q  585 caa 587  Q
    |||    
T  31708290 caa 31708292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 52364017 - 52363959
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||| |||||||||| |||||||||| |  |||||| ||||||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacatac 52363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 670
Target Start/End: Original strand, 584914 - 584983
Alignment:
Q  601 aaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||| ||||||||||| ||| ||||||||||||||||||| | | ||| | |||||| |||||||||||    
T  584914 aaacatatcaaaatcaactctgcacctctagaatcaattttggttactccaaaagtgggaccaaacatac 584983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 5406873 - 5406804
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    ||||||||| |  ||||||||||||| ||||||||||||| |||| ||||||| | ||||||||| ||||    
T  5406873 aaccaaacacagaaaaatcaattctagacctctagaatcatttttggctcctccaaaagtggaactaaac 5406804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 670
Target Start/End: Complemental strand, 38022392 - 38022331
Alignment:
Q  609 caaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||| ||||||||||| ||| |  | |||||||||| ||||||||||||    
T  38022392 caaaatcaattctacacttctagaatcaactttggtccttctagaagtgaaaccaaacatac 38022331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 52141362 - 52141435
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||| ||||| |||| |||| |||||||||||| | |||||||| | |  ||||||||||||||||||||||||    
T  52141362 caactaaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaacata 52141435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 670
Target Start/End: Complemental strand, 7262868 - 7262792
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||  ||| |||||||||| |||||||| |||||||||| || | ||||  |||| ||||||||||||    
T  7262868 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatac 7262792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 675
Target Start/End: Original strand, 36239692 - 36239760
Alignment:
Q  607 atcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatacgcgta 675  Q
    |||||||| || |||||  |||||||||||||||| ||||||| | ||||||||| |||||||| ||||    
T  36239692 atcaaaattaactctacggctctagaatcaattttggctcctccataagtggaactaaacatacacgta 36239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 1441361 - 1441414
Alignment:
Q  487 ctaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaag 541  Q
    |||||||||||||||| ||||| |||||| ||||||  |||||||||||||||||    
T  1441361 ctaaaagtgagttgaacgtaaagtgattt-gtgtttagatacattcacgtaaaag 1441414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 16972016 - 16972110
Alignment:
Q  485 gactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattcta 580  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  | ||||||  ||||| ||||| | ||||| |||||||    
T  16972016 gactaaaagtgagttgaaggtaaaatgattt-gtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 486 - 587
Target Start/End: Complemental strand, 32928024 - 32927924
Alignment:
Q  486 actaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatc 585  Q
    ||||||| ||||||||||| ||| ||||||| |||||| ||||||||| |||||||  ||||||||  ||||| ||||||| ||||||||||||| ||||    
T  32928024 actaaaattgagttgaaggcaaagtgatttg-tgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatc 32927926  T
Q  586 aa 587  Q
    ||    
T  32927925 aa 32927924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 44141190 - 44141247
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||    
T  44141190 aatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 44141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 32994339 - 32994415
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||| |||| |||||||||||||| || ||||||||||  | |  ||||||||||||||||||||||||    
T  32994339 agcaaccaaacatatcataatcaattctacacatccagaatcaattacaacctctctagaagtggaaccaaacatac 32994415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 39648263 - 39648335
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||||  |||||||||||| |||| ||||||||||||||||  |||||||| ||||| |||||||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacata 39648335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 599 - 670
Target Start/End: Complemental strand, 41614809 - 41614738
Alignment:
Q  599 ccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||| |||||||||||| || |||||||||||||||||| ||||||  | || |||||||||||||||    
T  41614809 ccaaacaagtcaaaatcaattttatacctctagaatcaattttggctcctacacaaatggaaccaaacatac 41614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 15677913 - 15677989
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||  ||| |||||||| |||| ||| | ||||||||||| | ||| |||||||||||||||||||||    
T  15677913 agcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaacatac 15677989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 24776211 - 24776283
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||| |||||||||||||||||||| | |||||||||||   ||| || | |||||||||||||||||    
T  24776211 aaccaaacatatcaaaatcaattctacaccccgagaatcaatttcgcctcttccaaaagtggaaccaaacata 24776283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 670
Target Start/End: Complemental strand, 30251702 - 30251632
Alignment:
Q  600 caaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||| |||||||| |||| ||||| |||| |||||||||| ||||||| | | ||||||||||||||||    
T  30251702 caaacatatcaaaataaattttacacatctaaaatcaattttggctcctccaaatgtggaaccaaacatac 30251632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 35495216 - 35495154
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||| | ||||||||||||| | | ||| | ||||||||||||||||||    
T  35495216 tcaaaatcaattctacacttgtagaatcaattttgggtgctccaaaagtggaaccaaacatac 35495154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 34732038 - 34732098
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||| ||||||||||||||| |   ||||| ||||||| ||||||||||    
T  34732038 aaaatcaattctacacatctagaatcaattttggtatctctaaaagtggagccaaacatac 34732098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 10368106 - 10368044
Alignment:
Q  477 ttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaa 540  Q
    ||||||| || ||||||||||||||||||||| |||||| ||||||  ||||||||| ||||||    
T  10368106 ttgattttgagtaaaagtgagttgaaggtaaagtgattt-gtgtttagatacattcatgtaaaa 10368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 587
Target Start/End: Complemental strand, 35495120 - 35495022
Alignment:
Q  488 taaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaa 587  Q
    |||||||| ||||||  |||| ||||||| |||||| ||| ||||| ||||||| |||||||||  || || ||||||| ||||  ||||||||||||||    
T  35495120 taaaagtgggttgaatataaagtgatttg-tgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaa 35495022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 4554290 - 4554228
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||| ||||||||||||||||||||  |||| || | || | |||||||||||||    
T  4554290 tcaaaatcaattttacacctctagaatcaatttaggctcatccaaaatttgaaccaaacatac 4554228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 4554462 - 4554400
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||| |||||||||| ||||||||||||||  ||||||| | |||||  |||||||||||    
T  4554462 tcaaaatgaattctacacttctagaatcaatttgggctcctccaaaagtgataccaaacatac 4554400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 4662886 - 4662952
Alignment:
Q  517 gtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaa 583  Q
    ||||||| ||||||||||| |||||| ||||||||  || || ||||||| ||||| ||||||||||    
T  4662886 gtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaa 4662952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 4950441 - 4950379
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||| || |  |||||||||||||||||| |||| | || |||||||||||||||    
T  4950441 tcaaaatcaattgtataaatctagaatcaattttagcacctccaaaattggaaccaaacatac 4950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 10367953 - 10367895
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||| | ||| | |||||||||| || ||||||||||| |||||||||||||    
T  10367953 aatcaattctatatctccataatcaattttggcccctctagaagtagaaccaaacatac 10367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 8252762 - 8252721
Alignment:
Q  599 ccaaacaaatcaaaatcaattctacacctctagaatcaattt 640  Q
    |||||||  ||||||||| |||||||||||||||||||||||    
T  8252762 ccaaacatgtcaaaatcagttctacacctctagaatcaattt 8252721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 18123358 - 18123294
Alignment:
Q  486 actaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaac 551  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| ||| | |||||||  ||||||||    
T  18123358 actaaaagtgaattgaaggtaaaatgattt-gtgttggaatatatttatgtaaaagtgagttgaac 18123294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 32101040 - 32100967
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||  ||| |||||||||||||| |  |||||||| | |||  |||||| ||||||||||||||||||    
T  32101040 aaccaaacatgtcagaatcaattctacacattcagaatcaactctagtccctctaaaagtggaaccaaacatac 32100967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 577
Target Start/End: Complemental strand, 32736592 - 32736504
Alignment:
Q  488 taaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaatt 577  Q
    |||||||||||  |||||||||| ||||| | |||||||||||||| |||||||  | ||||||  ||||| ||||||| ||||| ||||    
T  32736592 taaaagtgagtcaaaggtaaaataatttg-tatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatt 32736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 31794 - 31720
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||    
T  31794 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacatac 31720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 670
Target Start/End: Original strand, 49138952 - 49139026
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||    
T  49138952 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatac 49139026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 50358143 - 50358205
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||||||||||||||||||||  |||| | |||||||||||| |||||||    
T  50358143 tcaaaatcaattctacacctctagaatcaattttttctccaccagaagtggaaccgaacatac 50358205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 50061768 - 50061825
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||    
T  50061768 aatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 50061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 670
Target Start/End: Complemental strand, 33843639 - 33843585
Alignment:
Q  616 aattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  33843639 aattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacatac 33843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 48045816 - 48045893
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcc-tctagaagtggaaccaaacatac 670  Q
    ||||||||||||  ||  ||||||||||||  |||||||||||||||| || || |||||||||||||||||||||||    
T  48045816 agcaaccaaacatgtccgaatcaattctacttctctagaatcaattttggccccctctagaagtggaaccaaacatac 48045893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 670
Target Start/End: Complemental strand, 2635133 - 2635057
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||| ||||||  |||||||||||| ||||| ||||||||||||||| |  |||||| ||||| ||||||||||||    
T  2635133 agcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatac 2635057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 668
Target Start/End: Original strand, 21691353 - 21691409
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    ||||||||||||||||| |||||||||| | |  |||||||||||||||||||||||    
T  21691353 aatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacat 21691409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 1099806 - 1099731
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||||| |  |||||||||||||| || ||||||||||||||||  |||||| | |||||| ||||||||||    
T  1099806 agcaaccaaatatttcaaaatcaattctgcatctctagaatcaattttgtctcctccaaaagtggtaccaaacata 1099731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 668
Target Start/End: Complemental strand, 20712604 - 20712546
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    ||||||||||||| ||||||||||||||||||  ||| || | ||||||||||||||||    
T  20712604 aaaatcaattctaaacctctagaatcaattttgcctcttccataagtggaaccaaacat 20712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 41058891 - 41058821
Alignment:
Q  599 ccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||  ||| |||||||||||| ||| ||||||||||||  |||| |||| |||||||||||||||||    
T  41058891 ccaaacatgtcacaatcaattctactcctttagaatcaatttaggctcatctaaaagtggaaccaaacata 41058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 55085133 - 55085194
Alignment:
Q  610 aaaatcaattctacacctctagaatcaa-ttttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||| |||||||||||||| ||||  |||||| | ||||||||||||||||||    
T  55085133 aaaatcaattctatacctctagaatcaatttttttctcctccaaaagtggaaccaaacatac 55085194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 666
Target Start/End: Original strand, 471999 - 472055
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    |||||||||||||||| ||||||||||| |||| || ||| ||||||||||| ||||    
T  471999 aaaatcaattctacacttctagaatcaaatttacctactccagaagtggaactaaac 472055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 670
Target Start/End: Complemental strand, 43076017 - 43075957
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||| |||||||||||||||||||  |||||| | |||  |||||||||||||    
T  43076017 aaaatcaattctgcacctctagaatcaattttgcctcctccaaaagcagaaccaaacatac 43075957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 587
Target Start/End: Original strand, 32818328 - 32818423
Alignment:
Q  493 gtgagttgaaggtaaaatgatttg-gtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaa 587  Q
    |||| ||||||||||| |||| |  ||||||| ||||||||| |||||||  ||||||||  ||||| ||||||  ||||| ||||||||||||||    
T  32818328 gtgatttgaaggtaaagtgatatatgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaa 32818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 35065033 - 35064962
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaa 665  Q
    |||||||||| |  ||| ||||||||||||||||| | ||||||||||  | |||| |||||||||||||||    
T  35065033 agcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 45329816 - 45329741
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||||  | ||| |||||| |||||||||| |||||||||| |||| |  | |||||||||||||||||    
T  45329816 agcaaccaaacatgttaaagtcaattttacacctctataatcaattttggctcttacaaaagtggaaccaaacata 45329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 26617742 - 26617792
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagc 644  Q
    |||| |||||||  |||||||||||| ||||| ||||||||||||||||||    
T  26617742 agcatccaaacatgtcaaaatcaattttacacatctagaatcaattttagc 26617792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 29904184 - 29904126
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||| || | |||||||||||||| | | ||||||||||||| ||||||||||||    
T  29904184 aatcaattttatatctctagaatcaattgtggatcctctagaagtgaaaccaaacatac 29904126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 33456326 - 33456268
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||| |  | |||||||| |||  |||||||||||||||||||||||||    
T  33456326 aatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaacatac 33456268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 529
Target Start/End: Original strand, 20712749 - 20712809
Alignment:
Q  468 ttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaataca 529  Q
    |||||||| |||||| ||||||||| ||||||||||||||| | |||| ||||||| |||||    
T  20712749 ttgagtgaattgattccgactaaaaatgagttgaaggtaaagttattt-gtgtttggataca 20712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 641
Target Start/End: Complemental strand, 35995184 - 35995151
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaatttt 641  Q
    ||||||||||||||||| ||||||||||||||||    
T  35995184 tcaaaatcaattctacaactctagaatcaatttt 35995151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 459 - 584
Target Start/End: Complemental strand, 45557524 - 45557400
Alignment:
Q  459 gaattggttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaat 558  Q
    |||||| |||||| ||| ||||||  |||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||  |||||| |   ||||    
T  45557524 gaattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgattt-gtgtttggatacattcatgtaaaagtgagttgagctacaaat 45557426  T
Q  559 gtgtgtgttaaaatgaattctagaat 584  Q
     ||||||| ||||| ||| |||||||    
T  45557425 ttgtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 667
Target Start/End: Original strand, 38123761 - 38123836
Alignment:
Q  592 atagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaaca 667  Q
    |||| |||||||||  | ||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||    
T  38123761 ataggaaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 477 - 587
Target Start/End: Complemental strand, 40491719 - 40491610
Alignment:
Q  477 ttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaat 576  Q
    ||||||| |||||||||||||||||||||||| ||||||  | |||| ||||||||| |||||||  |||| |||  ||||| ||||||| ||| | |||    
T  40491719 ttgattttgactaaaagtgagttgaaggtaaagtgattt-atttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaat 40491621  T
Q  577 tctagaatcaa 587  Q
    |||||||||||    
T  40491620 tctagaatcaa 40491610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 15050259 - 15050187
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||  |||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||||    
T  15050259 aaccaaacaggtcaaaatcaattcttcacttctagaatcaattttggctcctcca-aagtggaaccaaacatac 15050187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 45004952 - 45004879
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||  |||||||||||||||||||||||||||||||||| || | | |||||||| ||||||| ||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaatatac 45004879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 533
Target Start/End: Complemental strand, 25156358 - 25156286
Alignment:
Q  460 aattggttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattca 533  Q
    ||||| |||| ||||| || |||  |||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  25156358 aattgatttttagtgatttaattctgactaaaaatgagttgaagataaaatgattt-gtgtttgaatacattca 25156286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 645
Target Start/End: Original strand, 22310784 - 22310832
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagct 645  Q
    ||||||||| ||||||||||||| |||| || |||||||||||||||||    
T  22310784 aaccaaacatatcaaaatcaattatacatctttagaatcaattttagct 22310832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 12306704 - 12306658
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattt 640  Q
    ||||||||||||  |||||||||||||||||||||||| ||| ||||    
T  12306704 agcaaccaaacatgtcaaaatcaattctacacctctaggatccattt 12306658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 584
Target Start/End: Original strand, 38123599 - 38123716
Alignment:
Q  466 ttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtg 565  Q
    |||||||| | ||||||  |||||||| ||||||||||||||| | |||| ||||| | | ||||||| |||||||  |||||| |  ||||| || |||    
T  38123599 ttttgagtaaattgattatgactaaaattgagttgaaggtaaagtaattt-gtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  566 ttaaaatgaattctagaat 584  Q
    | ||||| |||||||||||    
T  38123698 taaaaatcaattctagaat 38123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 641
Target Start/End: Complemental strand, 883410 - 883377
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaatttt 641  Q
    |||||||||| |||||||||||||||||||||||    
T  883410 tcaaaatcaactctacacctctagaatcaatttt 883377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 641
Target Start/End: Complemental strand, 1242739 - 1242706
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaatttt 641  Q
    |||||||||| |||||||||||||||||||||||    
T  1242739 tcaaaatcaactctacacctctagaatcaatttt 1242706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 545
Target Start/End: Original strand, 33853411 - 33853495
Alignment:
Q  460 aattggttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaag 545  Q
    ||||| |||| ||||| ||||||  | |||| |||||||||||| |||| ||||||  |||||| ||||||||| |||||||||||    
T  33853411 aattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgattt-atgtttggatacattcatgtaaaagcaag 33853495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 609 - 670
Target Start/End: Complemental strand, 7629817 - 7629756
Alignment:
Q  609 caaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||    
T  7629817 caaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatac 7629756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 665
Target Start/End: Original strand, 680420 - 680469
Alignment:
Q  616 aattctacacctctagaatcaattttagctcctctagaagtggaaccaaa 665  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  680420 aattctacacctctagaatcaattttagctcctccaaaagtggaaccaaa 680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 663
Target Start/End: Complemental strand, 40582716 - 40582650
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaacca 663  Q
    |||||||||  | |||||||||||||||||||||||||||||||| |||| || | |||||||||||    
T  40582716 aaccaaacatgttaaaatcaattctacacctctagaatcaattttggctcttccaaaagtggaacca 40582650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 551
Target Start/End: Complemental strand, 16518909 - 16518846
Alignment:
Q  487 ctaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaac 551  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||  ||||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgattt-gtgtttggatacattcatgtaaaagtgagttgaac 16518846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 607 - 670
Target Start/End: Original strand, 3476560 - 3476623
Alignment:
Q  607 atcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||||||||||| ||| |  |||| || | ||||||||||||||||||    
T  3476560 atcaaaatcaattctacacctctagaataaatatcggctcttccaaaagtggaaccaaacatac 3476623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 599 - 666
Target Start/End: Complemental strand, 43717307 - 43717240
Alignment:
Q  599 ccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    |||||||  |||||||||||||||||| |||||||||||||||| | |||| | ||||| ||||||||    
T  43717307 ccaaacatgtcaaaatcaattctacacatctagaatcaattttaacacctccaaaagtgaaaccaaac 43717240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 42774964 - 42775026
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||| |||||||||||||||||| ||| | ||||||||  ||||| ||||||    
T  42774964 tcaaaatcaattctatacctctagaatcaattttggctaccctagaagttaaaccacacatac 42775026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 15928542 - 15928595
Alignment:
Q  587 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattt 640  Q
    |||||| | ||||||||||  ||||||||||||||||||||| |||||||||||    
T  15928542 actcaacaacaaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 663
Target Start/End: Original strand, 16013842 - 16013895
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaacca 663  Q
    ||||||||||||||||||||||||| |||||| ||||||| | |||| ||||||    
T  16013842 aaaatcaattctacacctctagaataaattttggctcctccaaaagtagaacca 16013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 37420317 - 37420358
Alignment:
Q  599 ccaaacaaatcaaaatcaattctacacctctagaatcaattt 640  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  37420317 ccaaacatgtcaaaatcaattctacacctctagaatcaattt 37420358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 3654724 - 3654784
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||  |||||||||||| |  |||||| | ||||||||||||||||||    
T  3654724 aaaatcaattctacactgctagaatcaattatgcctcctccaaaagtggaaccaaacatac 3654784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 16519400 - 16519348
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaacc 662  Q
    ||||||||||||||||||||||||||||||||   ||||| | ||||||||||    
T  16519400 aaaatcaattctacacctctagaatcaattttgcttcctccaaaagtggaacc 16519348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 595 - 651
Target Start/End: Complemental strand, 44439219 - 44439163
Alignment:
Q  595 gcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctcta 651  Q
    |||||||||||  ||||||| ||||| |||||| ||||||||||||| |||||||||    
T  44439219 gcaaccaaacatgtcaaaattaattcaacacctttagaatcaattttggctcctcta 44439163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 2002824 - 2002886
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||| ||||||||||| ||||||||||||| |||| | ||| | |||| ||||||||||||||    
T  2002824 tcaacatcaattctactcctctagaatcaactttaacccctgtggaaggggaaccaaacatac 2002886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 668
Target Start/End: Complemental strand, 16518749 - 16518676
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||||||||||| |||| |||||||||||||||||  |||||||||| | |||  ||| ||||||||| ||||||    
T  16518749 agcaaccaaacatatcagaatcaattctacacctc-ggaatcaatttcaactcacctataagtggaactaaacat 16518676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 540
Target Start/End: Complemental strand, 3854012 - 3853932
Alignment:
Q  459 gaattggttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaa 540  Q
    |||||| ||||||  || ||||||| || ||||||||||||||| ||||| ||||||  |||||| ||||||||| ||||||    
T  3854012 gaattgattttgatagaattgattttgattaaaagtgagttgaatgtaaattgattt-atgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 30503359 - 30503310
Alignment:
Q  466 ttttgagtgagttgatttcgactaaaagtgagttgaaggtaaaatgattt 515  Q
    |||||||||| ||||||  |||||||||| ||||||||||||| ||||||    
T  30503359 ttttgagtgaattgattctgactaaaagttagttgaaggtaaactgattt 30503310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 33047685 - 33047742
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||||||||| | |||||||||| |  |||||||||| | |||||||||||    
T  33047685 aatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacata 33047742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Original strand, 42343796 - 42343829
Alignment:
Q  477 ttgatttcgactaaaagtgagttgaaggtaaaat 510  Q
    ||||||| ||||||||||||||||||||||||||    
T  42343796 ttgattttgactaaaagtgagttgaaggtaaaat 42343829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 5724745 - 5724821
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||| |||||||  ||| |||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||    
T  5724745 agcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatac 5724821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 587 - 665
Target Start/End: Original strand, 25195472 - 25195550
Alignment:
Q  587 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaa 665  Q
    |||| ||||||||||||||  ||| |||||||| ||||| || |||||||||||| | |||||||||||||||||||||    
T  25195472 actcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaaa 25195550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 669
Target Start/End: Complemental strand, 7263027 - 7262966
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||||||||||||| |||||||||||||||  ||| |||| |||||||||||||||||    
T  7263027 tcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata 7262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 670
Target Start/End: Original strand, 10400814 - 10400887
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||   ||||| |  |||||||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaacatac 10400887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 592 - 668
Target Start/End: Complemental strand, 34620858 - 34620782
Alignment:
Q  592 atagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||| |||||||||  |||||||||||||||||||| ||||||||||||| | ||||| | ||||||||| ||||||    
T  34620858 ataggaaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacgaaacat 34620782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 592 - 668
Target Start/End: Complemental strand, 34748295 - 34748219
Alignment:
Q  592 atagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||| |||||||||  |||||||||||||||||||| ||||||||||||| | ||||| | ||||||||| ||||||    
T  34748295 ataggaaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacgaaacat 34748219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 613 - 670
Target Start/End: Complemental strand, 34910954 - 34910897
Alignment:
Q  613 atcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| ||||||| ||||    
T  34910954 atcaattctacacctctagaatcgattttggcccctctagaagtgaaaccaaaaatac 34910897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 666
Target Start/End: Original strand, 33141822 - 33141893
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    |||||||||||| ||||||||||||| |||||  |||||||||||||| ||| ||||| ||||| ||||||||    
T  33141822 agcaaccaaacatatcaaaatcaattttacactgctagaatcaattttggct-ctctaaaagtgaaaccaaac 33141893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 34911100 - 34911053
Alignment:
Q  460 aattggttttgagtgagttgatttcgactaaaagtgagttgaaggtaa 507  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  34911100 aattgattttgagtgaattgattccgactaaaagtgagttgaaggtaa 34911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 587
Target Start/End: Complemental strand, 3482148 - 3482078
Alignment:
Q  517 gtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaa 587  Q
    ||||||||||||||||| ||||||| |||||||||  ||||  ||||||| ||||| ||||||| ||||||    
T  3482148 gtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaa 3482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 24982251 - 24982189
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||| ||||| |||||||| |||||| || | ||||||| ||||||||||    
T  24982251 tcaaaatcaattctacaactctaaaatcaattatagctcatccaaaagtggatccaaacatac 24982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 29240581 - 29240643
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||| |||||||||||||||||||||   ||| | | ||||||||||||||||||    
T  29240581 tcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacatac 29240643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 1485254 - 1485338
Alignment:
Q  587 actcaatagcaaccaaacaaatcaa-aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||| ||||| ||||||  |||| |||||||||||||||||||||||| || ||  | |||||||||||| ||||||| ||||    
T  1485254 actcaagagcaaacaaacatgtcaagaatcaattctacacctctagaatccatattgacccctctagaagtgaaaccaaatatac 1485338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 582 - 670
Target Start/End: Original strand, 7952812 - 7952900
Alignment:
Q  582 aatcaactcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||| | ||| ||||||  ||| |||||||| |||||||| | ||| |||||||||  ||||||||||||||| || |||||    
T  7952812 aatcaactcaaaaccaatcaaacatgtcataatcaattttacacctccataattaattttagcctctctagaagtggaactaatcatac 7952900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 580
Target Start/End: Complemental strand, 8855048 - 8854959
Alignment:
Q  489 aaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattcta 580  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||| |||| ||||| ||| ||| ||||| |||||||    
T  8855048 aaaagttagttgaaggtaaaataattt-gtgtttg-atacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaatcaattcta 8854959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 670
Target Start/End: Complemental strand, 24974172 - 24974109
Alignment:
Q  607 atcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||| ||| ||| || ||| ||||||| | |||||||| |||||||||    
T  24974172 atcaaaatcaattctacacccctacaattaactttggctcctccaaaagtggaatcaaacatac 24974109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 641
Target Start/End: Original strand, 33136598 - 33136645
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaatttt 641  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||||||    
T  33136598 agcaaccaaacatgtcaaaatcaattatacacctctagaattaatttt 33136645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 33997165 - 33997098
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaa 664  Q
    |||||||||  |||||||| |||||| | |||||||||||||||| | ||||| | ||||||||||||    
T  33997165 aaccaaacatgtcaaaatcgattctaaatctctagaatcaattttggttcctccaaaagtggaaccaa 33997098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 669
Target Start/End: Original strand, 3437011 - 3437071
Alignment:
Q  607 atcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||| |||||||||||| || |||||||||||| |||||||| ||||||| |||||||||    
T  3437011 atcaaaagcaattctacacc-ct-gaatcaattttaactcctctaaaagtggatccaaacata 3437071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 4910876 - 4910802
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||  ||| |||||||||||||| |  |||||||||| |||   ||||| ||||||||||||||||||    
T  4910876 caaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaacatac 4910802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 597 - 663
Target Start/End: Complemental strand, 34063299 - 34063233
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaacca 663  Q
    |||||||||  |||||||||||||||||||| |||||||||  || ||||||| | ||| |||||||    
T  34063299 aaccaaacatgtcaaaatcaattctacacctgtagaatcaacgttggctcctccaaaagcggaacca 34063233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 667
Target Start/End: Complemental strand, 19601771 - 19601714
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaaca 667  Q
    |||| |||||||||| |||| |||||||||||  |||||| | |||||||||||||||    
T  19601771 aaaaacaattctacatctctggaatcaattttgactcctccaaaagtggaaccaaaca 19601714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 641
Target Start/End: Complemental strand, 26550487 - 26550442
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaatttt 641  Q
    ||||||||||  ||||||||||||||||||||||| ||||| ||||    
T  26550487 caaccaaacatgtcaaaatcaattctacacctctataatcattttt 26550442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 15478116 - 15478192
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||  ||||||||||||||||||| ||| |||||| ||| ||||||| | ||||||||||||||||||    
T  15478116 agcaaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatac 15478192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 6041662 - 6041587
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||  |||| ||||| | ||| |||||||||||    
T  6041662 agcaaccaaacatatcaaaatcaattttacacctctagaatcaattccagctgctctaaacgtgaaaccaaacata 6041587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 611 - 670
Target Start/End: Complemental strand, 8130911 - 8130852
Alignment:
Q  611 aaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||    
T  8130911 aaatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacatac 8130852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 485 - 587
Target Start/End: Complemental strand, 34915199 - 34915098
Alignment:
Q  485 gactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaat 584  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||  |||||||   ||||   |||||||| ||| |||||||||||    
T  34915199 gactaaaagtgagttgcaggtaaaatgattt-atgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T
Q  585 caa 587  Q
    |||    
T  34915100 caa 34915098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 600 - 668
Target Start/End: Original strand, 2099807 - 2099873
Alignment:
Q  600 caaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    ||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||  ||||||||||||    
T  2099807 caaacaagtcataatcaattctacacctccagaatcaattctaactcctctagaa--ggaaccaaacat 2099873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 8381951 - 8381882
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    |||||||||  |||||||||||| || ||||||||||||||||||  |||||| |||||| |||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaac 8381882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 27849267 - 27849208
Alignment:
Q  491 aagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaac 551  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||    
T  27849267 aagtgagttgaaggtaaaatgattt-gtgttaggatacattcatgtaaaagaaagttgaac 27849208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 587 - 638
Target Start/End: Complemental strand, 24587886 - 24587835
Alignment:
Q  587 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaat 638  Q
    |||||| ||||||||||||  ||| |||||||||||||||||||||||||||    
T  24587886 actcaagagcaaccaaacatgtcacaatcaattctacacctctagaatcaat 24587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 587
Target Start/End: Complemental strand, 3016263 - 3016194
Alignment:
Q  518 tgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatcaa 587  Q
    |||||| ||||||||| |||||||  ||||||||||||||| | ||||| || || ||||||||||||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaa 3016194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 670
Target Start/End: Complemental strand, 6021748 - 6021696
Alignment:
Q  617 attctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||||||| |||| |||||| | ||||||||||||||||||    
T  6021748 attctacacctctagaatcaa-tttaactcctccaaaagtggaaccaaacatac 6021696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 587
Target Start/End: Complemental strand, 7524245 - 7524145
Alignment:
Q  486 actaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaaccgtaaatgtgtgtgttaaaatgaattctagaatc 585  Q
    |||||||||||| | |||||||| |||||| ||||||| | ||||| | |||||||  ||||||||  ||||| ||||||| ||||| ||||||| ||||    
T  7524245 actaaaagtgagctcaaggtaaagtgattt-gtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatc 7524147  T
Q  586 aa 587  Q
    ||    
T  7524146 aa 7524145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 28084021 - 28084078
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||||||  | ||| |||||||| |||||||||||||||||| ||||||||    
T  28084021 aatcaattctacactaccagagtcaattttggctcctctagaagtggaatcaaacata 28084078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 20721046 - 20721106
Alignment:
Q  610 aaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||| ||||||||||||||||||||||||||   ||||| | ||||||||| ||||||||    
T  20721046 aaaatgaattctacacctctagaatcaattttgattcctccaaaagtggaacaaaacatac 20721106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 612 - 668
Target Start/End: Complemental strand, 41516939 - 41516883
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||||||||||||||||||||||  |||||  |||||| | ||||||||||||||||    
T  41516939 aatcaattctacacctctagaatggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 45660864 - 45660939
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||  ||| |||||||||| |||||| | |||||||||| || |||| ||||||||||| ||||||||    
T  45660864 agcaaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaacgaaacatac 45660939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 5868149 - 5868231
Alignment:
Q  451 gtgataaagaattggtttt-gagtgagttgatttcgactaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattca 533  Q
    |||||||||||||| |||| |||||| ||||||  ||||||||| |||| ||||||||||| |||| ||||||| |||| ||||    
T  5868149 gtgataaagaattgatttttgagtgaattgattatgactaaaagcgagtcgaaggtaaaatcattt-gtgtttggatacgttca 5868231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 550
Target Start/End: Complemental strand, 35961499 - 35961437
Alignment:
Q  487 ctaaaagtgagttgaaggtaaaatgatttggtgtttgaatacattcacgtaaaagcaagttgaa 550  Q
    |||||||||||||||||||||||||||||  |||||  ||||||||| |||||||  |||||||    
T  35961499 ctaaaagtgagttgaaggtaaaatgattt-atgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 639
Target Start/End: Original strand, 36780234 - 36780277
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaatt 639  Q
    |||||||||| |||||||||||||||||||||| | ||||||||    
T  36780234 caaccaaacatatcaaaatcaattctacacctccataatcaatt 36780277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 15084726 - 15084784
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||  ||||||||| ||  | ||||||||||| |||||||||||||    
T  15084726 aatcaattctacaccttcagaatcaatattgacccctctagaagtagaaccaaacatac 15084784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 587 - 641
Target Start/End: Complemental strand, 31117452 - 31117398
Alignment:
Q  587 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaatttt 641  Q
    |||||| | |||||||||  ||||||||||||| |||||||||||| ||||||||    
T  31117452 actcaaaaccaaccaaacctatcaaaatcaattttacacctctagagtcaatttt 31117398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 30557483 - 30557414
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaac 666  Q
    |||||||||  ||| ||||||||||||||||| |||||||||| |||  | | ||||||||| |||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaattctagtccttgtagaagtgggaccaaac 30557414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 643
Target Start/End: Complemental strand, 37131904 - 37131855
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttag 643  Q
    ||||||||||||   |||||||||||||| ||||||||||||||| ||||    
T  37131904 agcaaccaaacatgccaaaatcaattctatacctctagaatcaatgttag 37131855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 15368199 - 15368137
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||  ||||||||||||||| ||||||| | ||||||||||||||||||    
T  15368199 tcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacatac 15368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 28973830 - 28973753
Alignment:
Q  592 atagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||  ||||||| | || | ||||||||||||    
T  28973830 atagcatccaaacatatcaaaatcaattctacacatctagaatcaatttaggctcctccaaaactagaaccaaacata 28973753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 594 - 670
Target Start/End: Original strand, 3043119 - 3043195
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||   ||||| | ||||||||||| ||||||    
T  3043119 agcaactaaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaaccagacatac 3043195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 37121529 - 37121479
Alignment:
Q  620 ctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  37121529 ctacacctctagaatcaattttggctcctctacaaatggaaccaaacatac 37121479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 38845644 - 38845702
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||||| |||||||||||| |   ||||||||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaacatac 38845702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 597 - 668
Target Start/End: Original strand, 34250469 - 34250540
Alignment:
Q  597 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    |||||||||  |||||| ||||||||||| ||||||||||||| || |||||  | ||||||||||||||||    
T  34250469 aaccaaacatgtcaaaaacaattctacacatctagaatcaattataactccttcaaaagtggaaccaaacat 34250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 29922862 - 29922788
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||  ||||||||||||||||||  ||||||||||||||  |||||| | ||||||||  ||||||||    
T  29922862 caaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaagtaaacatac 29922788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 639
Target Start/End: Complemental strand, 39514862 - 39514824
Alignment:
Q  601 aaacaaatcaaaatcaattctacacctctagaatcaatt 639  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39514862 aaacaagtcaaaatcaattctacacctctagaatcaatt 39514824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 641
Target Start/End: Original strand, 10860192 - 10860233
Alignment:
Q  600 caaacaaatcaaaatcaattctacacctctagaatcaatttt 641  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  10860192 caaacaaatcaaaatcaattctacatctctaaaatcaatttt 10860233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 39097232 - 39097159
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||  |   ||||| ||||| |||||||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaacata 39097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 670
Target Start/End: Original strand, 2973397 - 2973451
Alignment:
Q  616 aattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||| || | ||||||||||||| ||||||||| |||||||| |||||||||    
T  2973397 aattctatacttttagaatcaattttggctcctctaaaagtggaagcaaacatac 2973451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 10161782 - 10161720
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||| ||||||||||||| ||||||||||||||||  ||| |   ||||||||||||||||||    
T  10161782 tcaagatcaattctacacatctagaatcaattttacttccccagaaagtggaaccaaacatac 10161720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 10859950 - 10860012
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||| ||||||||||||| ||| ||||||  ||| || | ||||||||||||||||||    
T  10859950 tcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacatac 10860012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 664
Target Start/End: Complemental strand, 16016949 - 16016879
Alignment:
Q  594 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaa 664  Q
    ||||| ||||| | |||||||||||| |||||||||||||| || ||| ||| || || ||||||||||||    
T  16016949 agcaatcaaaccagtcaaaatcaattatacacctctagaataaagtttggcttctttaaaagtggaaccaa 16016879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 670
Target Start/End: Original strand, 18851195 - 18851273
Alignment:
Q  592 atagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||||||  ||| | ||||||||||| ||| | |||||||||| |  |||||||||| |||| |||||||||    
T  18851195 atagcaaccaaacacgtcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaacatac 18851273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 670
Target Start/End: Original strand, 22226353 - 22226427
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    ||||||||||  ||| |||||||||||||| || | |||||||| ||| || |||| |||||||| |||||||||    
T  22226353 caaccaaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaacatac 22226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 370827 - 370900
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacata 669  Q
    |||||||||| |||| |||||||| |||| ||| |||||| |||||  ||||| || || ||||||||||||||    
T  370827 caaccaaacatatcataatcaattttacatctcgagaatctattttgactcctttaaaaatggaaccaaacata 370900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 648
Target Start/End: Complemental strand, 707633 - 707596
Alignment:
Q  611 aaatcaattctacacctctagaatcaattttagctcct 648  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  707633 aaatcaattctacacctttagaatcaactttagctcct 707596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 641
Target Start/End: Original strand, 11911926 - 11911971
Alignment:
Q  596 caaccaaacaaatcaaaatcaattctacacctctagaatcaatttt 641  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||    
T  11911926 caactaaacaagtcaaaatcaattttacatctctagaatcaatttt 11911971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 529
Target Start/End: Complemental strand, 14299456 - 14299416
Alignment:
Q  488 taaaagtgagttgaaggtaaaatgatttggtgtttgaataca 529  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  14299456 taaaagtgagttgaaggtaaagtgattt-gtgtttgaataca 14299416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 612 - 668
Target Start/End: Complemental strand, 17378 - 17322
Alignment:
Q  612 aatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacat 668  Q
    ||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||    
T  17378 aatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaacat 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 14242 - 14304
Alignment:
Q  608 tcaaaatcaattctacacctctagaatcaattttagctcctctagaagtggaaccaaacatac 670  Q
    |||||||||||||||||| |||||| |||||||| |||| || | ||||||||||||||||||    
T  14242 tcaaaatcaattctacacatctagattcaattttggctcttccaaaagtggaaccaaacatac 14304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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