View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4509-Insertion-5 (Length: 409)

Name: NF4509-Insertion-5
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4509-Insertion-5
NF4509-Insertion-5
[»] chr5 (1 HSPs)
chr5 (48-409)||(7471804-7472171)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 48 - 409
Target Start/End: Complemental strand, 7472171 - 7471804
Alignment:
Q  48 ttctagagagaccattcacataataaaacctaaaataattacgatctttcattatgatacgatgaggttaatatcatatcgccttatataaaacacttgc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7472171 ttctagagagaccattcacataataaaacctaaaataattacgatctttcattatgatacgatgaggttaatatcatatcgccttgtataaaacacttgc 7472072  T
Q  148 aacaat--catggtgtctactcannnnnnnnatgaaataaattttaaggatggtgtcttagttaagacaaagaagtcattcggcctcaaagaaaacttac 245  Q
    ||||||  |||||||||||||||        ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7472071 aacaatatcatggtgtctactcattttttttatgaaataaattttaaggacggtgtcttagttaagataaagaagtcattcggcctcaaagaaaacttac 7471972  T
Q  246 aaaatgatttacatttatctc----aatacaggaaaatatttgaactcgtatcaggaacatttggatcaaagacatctttctttacaactaaaccaagct 341  Q
    |||||||||||||||||||||     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7471971 aaaatgatttacatttatctctatacatacaggaacatatttgaactcgtatcaggaacatttggatcaaagacatctttctttacgactaaaccaagct 7471872  T
Q  342 ctgagttactactatgtttgtcttgctataagaagttaatcgaattatttctactttattataatcgt 409  Q
      |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7471871 acgagttactactatgtttgacttgctataagaagttaatcgaattatttctactttattataatcgt 7471804  T

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