View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509-Insertion-7 (Length: 334)
Name: NF4509-Insertion-7
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 22086411 - 22086105
Alignment:
| Q |
8 |
atattttcctgcaccagcacaagcacaagcatcaagtgtctaattaggtgctactttcacaacgnnnnnnnnnnnnnnnnnattgttttggaagtacctt |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22086411 |
atattttcctgcaccagcacaagcataagcatcaagtgtctaattaggtgctactttcacaacgttttttttgtttttttaattgttttggaagtacctt |
22086312 |
T |
|
| Q |
108 |
ccacttcaagttcaaacttcaaactacttttagttttggaatttgctataggtctaactagtttaggacacacaatttttcttccattcaaaaatgatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22086311 |
ccacttcaagttcaaacttcaaactacttttagttttggaatttgctataggtctaactagtttaggacacacaatttttcttccattcaaaaatgatgt |
22086212 |
T |
|
| Q |
208 |
ctaaataacccttttcagtttcaccttccaattccaacaccatgagagcttcctcctcaaatcaagttcaacactcaaaccctaatccaaatccagttcc |
307 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22086211 |
ctaaacaacccttttcagtttcaccttccaattccaacaccatgagagcttcctcctcaaatcaagttcaacactcaaaccctaatccaaatccagttcc |
22086112 |
T |
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| Q |
308 |
atctaag |
314 |
Q |
| |
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||||||| |
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| T |
22086111 |
atctaag |
22086105 |
T |
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