View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_high_1 (Length: 527)
Name: NF4509_high_1
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 32 - 499
Target Start/End: Original strand, 3706062 - 3706529
Alignment:
| Q |
32 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctggcgagccccagcagtgacgatgaagaggtcagaccccatcgtcact |
131 |
Q |
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| T |
3706062 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcact |
3706161 |
T |
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| Q |
132 |
gaatagtcagtggaggcctggatcttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaa |
231 |
Q |
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| T |
3706162 |
gaatagtcagtggaggcctggatcttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaa |
3706261 |
T |
|
| Q |
232 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
331 |
Q |
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| T |
3706262 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
3706361 |
T |
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| Q |
332 |
ggttggagaaggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttgtgc |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3706362 |
ggttggagaaggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttgtgc |
3706461 |
T |
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| Q |
432 |
atttggatttgcttgtgctgatttgagtaaaggtaaatgcgaagtgtgtgatgggaaaatttgatttg |
499 |
Q |
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| T |
3706462 |
attttgatttgcttgtgctgatttgagtaaaggtaaatgtgaagtgtgtgatgggaaaatttgatttg |
3706529 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 325
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
162 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
261 |
Q |
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||||||||||| || ||||| ||||| ||||| ||||| || || || |||||||| || || |||| || | || |||||||| |||||||| | |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
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| Q |
262 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
325 |
Q |
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| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
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