View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_high_2 (Length: 468)
Name: NF4509_high_2
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 26891009 - 26891466
Alignment:
| Q |
1 |
attcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891009 |
attcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgt |
26891108 |
T |
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| Q |
101 |
attcgggaagagaaagaaatgcaaatatcataattgaatgtttatgttaagaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatg |
200 |
Q |
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| T |
26891109 |
attcgggaagagaaagaaatgcaaatatcataattgaatgtttgtgttaagaaaaatgctatttctcgcgacagattccttcccgagagtgtcccgaatg |
26891208 |
T |
|
| Q |
201 |
acatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttccccaattcaaaaacctctcatcctgtttctcccgactgtaacctctgtaaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
26891209 |
acatgttggattatgtgtaaaaaaaatctgtacaactaatcaaaacttccccaattcaaaaacctctcatcctgtttat-ccaactgtaacctctgtaaa |
26891307 |
T |
|
| Q |
301 |
tctgttacataagaagaagaatactcattactttcgttttgcgcttcctttcttattacgccatcgtcgttcctttgcggtgtttggttgtcgccgttca |
400 |
Q |
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| T |
26891308 |
tctgttacat---aagaagaatactcatcacttttgttttgcgcttcctttcttattacgccatcgtcgttcctttgcggtttttggttgtcgccgttca |
26891404 |
T |
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| Q |
401 |
attgccgtatttcacagttgtcgttcctttgccgtatttcgccctcaccgttcctttgcttc |
462 |
Q |
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||| |||||||| |||||||||||| ||| |||||||||||| ||||| |||||||||||| |
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| T |
26891405 |
atttccgtattttgcagttgtcgttctttttccgtatttcgccgtcaccattcctttgcttc |
26891466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 12072659 - 12072771
Alignment:
| Q |
150 |
agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttc |
249 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |||| |||| |||| ||| |||| |
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| T |
12072659 |
agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgtt-gattacgtgtaaaagacatctggacaaataataaaatcttc |
12072757 |
T |
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| Q |
250 |
cccaattcaaaaac |
263 |
Q |
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| T |
12072758 |
cccaattcaaaaac |
12072771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 12072865 - 12072957
Alignment:
| Q |
345 |
ttcctttcttattacgccatcgtcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgcc |
443 |
Q |
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||||||| |||||||||| |||||||||||||| |||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
12072865 |
ttcctttgttattacgccggcgtcgttcctttgccgtgtttcgttgtcattgttcaattgccgt------ccgttgtcgttcctttgccgtatttcgcc |
12072957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5078658 - 5078720
Alignment:
| Q |
1 |
attcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa |
63 |
Q |
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|||||||||| | ||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
5078658 |
attcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa |
5078720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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