View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_low_11 (Length: 242)
Name: NF4509_low_11
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_low_11 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 46451377 - 46451574
Alignment:
| Q |
45 |
caacaagttaacgatatatgcttaaagaatcatgttaatgatataaagtagtcatgactattatttaataaattatagtttttcattacattattcagga |
144 |
Q |
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| T |
46451377 |
caacaagttaatggtatatgctttaagaatcatgttaatgatataaaatagtcatgactattatttaataaattatagtttttcattacattattcagga |
46451476 |
T |
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| Q |
145 |
agggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatcagcaccaactccaccaccacaaccacaaccaacttatactcgttcac |
242 |
Q |
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| T |
46451477 |
agggcagaaagagcaaccaaaggtgcctgtagacccaattacaccaacatcagcaccaactccaccaccacaaccacaaccaacttatactcgttcac |
46451574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 46462327 - 46462526
Alignment:
| Q |
20 |
attgagaacgaacaatcatatgtaacaacaagttaacgatatatgcttaaagaatcatgttaatgatataaagtagtcatgactattatttaataaatta |
119 |
Q |
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| T |
46462327 |
attgagaacgaacgatcatatgtaacaacaagttaacgatatatgctttaagaatcatgttaatggtataaaatagtcattgctatcatttaataaatta |
46462426 |
T |
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| Q |
120 |
ta--gtttttcattacattattcaggaagggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatcagcaccaactccaccaccacaa |
217 |
Q |
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| T |
46462427 |
tatagtttttcattacatttatcaggaagggcagaaagagcaaccaaaggtacctgtagattcaattacaccaacatcagcaccaactccaccaccacaa |
46462526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 46345119 - 46344998
Alignment:
| Q |
96 |
tcatgactattatttaataaattatagtttttcattacattattcaggaagggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatc |
195 |
Q |
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| T |
46345119 |
tcattactgttatttaatcaataataatttttcattacattattcaggaagagcagaaagagcaatcagaggtgcctctagacccaattacaacaccatc |
46345020 |
T |
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| Q |
196 |
agcaccaactccaccaccacaa |
217 |
Q |
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| T |
46345019 |
agcaccaactccaccaccacaa |
46344998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 46471087 - 46471126
Alignment:
| Q |
130 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
169 |
Q |
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| T |
46471087 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
46471126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 46465880 - 46465919
Alignment:
| Q |
130 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
169 |
Q |
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| T |
46465880 |
ttacattattcaggaagcgcagaaagagcaatcaaaggtg |
46465919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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