View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_low_4 (Length: 370)
Name: NF4509_low_4
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 1607548 - 1607895
Alignment:
| Q |
16 |
gttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaa |
115 |
Q |
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| T |
1607548 |
gttatgacatcaatattatcatatgaatcaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaa |
1607647 |
T |
|
| Q |
116 |
atattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatattt |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607648 |
atattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatattt |
1607747 |
T |
|
| Q |
216 |
atattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||| |||||| |
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| T |
1607748 |
atattactctatgtatgtcacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagcacaata |
1607847 |
T |
|
| Q |
316 |
cttaaattttaaatagaaaaatataaaatcattgttagtacctttgct |
363 |
Q |
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| T |
1607848 |
cttaaattttaaatagaaaaatataaaatcattgttagtacctttgct |
1607895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 1630543 - 1630852
Alignment:
| Q |
18 |
tatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaaat |
117 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1630543 |
tatgacttcaatattattatatgaatcaaatgtaaatctggagattacaaaattttaacattttttttaggaaaaaattaaaacattatatacctaaaat |
1630642 |
T |
|
| Q |
118 |
attgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttat |
217 |
Q |
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| T |
1630643 |
attgaatatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttat |
1630742 |
T |
|
| Q |
218 |
attactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatact |
317 |
Q |
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| T |
1630743 |
attactctatgtatgtcacaaaataaacactcaataatttatctttcatttaattcttcctgaataaagttattgaataaccttttagcagtacaatact |
1630842 |
T |
|
| Q |
318 |
taaattttaa |
327 |
Q |
| |
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|||||||||| |
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| T |
1630843 |
taaattttaa |
1630852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 1624558 - 1624900
Alignment:
| Q |
16 |
gttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
1624558 |
gttatgacatcaatattatcatatgaattaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaa |
1624657 |
T |
|
| Q |
116 |
atattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatattt |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
1624658 |
atattgaagatacttgaacatctacaaattataattgctct--gtgtcttcttattttaaaattcatttttatatacccatttttaaccctatcatattt |
1624755 |
T |
|
| Q |
216 |
atattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||| |
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| T |
1624756 |
atattactctatgtatgtcacaaaataaacattcaataatttatctttcatttaattcttcctaaataaagttattgaataattttttagcagtacaata |
1624855 |
T |
|
| Q |
316 |
cttaaattttaaatagaaaaatataaaatcattgttagtacctttg |
361 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
1624856 |
ctt-aattttaaatagaaaaaaataaaatcattgttaatacctttg |
1624900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
88 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcattttta |
187 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
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| Q |
188 |
tcttcccattttcaa |
202 |
Q |
| |
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|||||| ||||||| |
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| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
95 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatc |
189 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 1631340 - 1631385
Alignment:
| Q |
318 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgct |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgct |
1631385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 10819219 - 10819162
Alignment:
| Q |
300 |
ttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
358 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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