View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_low_5 (Length: 344)
Name: NF4509_low_5
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 30471861 - 30471579
Alignment:
| Q |
24 |
tgtagcatatcaaatgttactctcatattttaacatctacggtacggttacgagatatatctttnnnnnnnnn--ttatgagatatatatcttttatttt |
121 |
Q |
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| T |
30471861 |
tgtagcatatcaaatgttactctcatattttaacatctacggtacggttacgagatatatctttaaaaaaaataattatgagatatatatcttttatttc |
30471762 |
T |
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| Q |
122 |
gttaactaaattaannnnnnnnnnnnnnnaccaaactcaataaatcaatttgtttactgttaaattaatcaaattgataaacatgattattgattaatta |
221 |
Q |
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| T |
30471761 |
gttaactaaattaatttttagttttttttaccaaactcaataaatcaatttgtttactgttaaattaatcaaattgataaacatgtttattgattaatta |
30471662 |
T |
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| Q |
222 |
atcaatttaatttgaagtgggccctataaatatagccaagtcagcatcaaagagcaagcatgcctatgtggcattctccttac |
304 |
Q |
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| T |
30471661 |
atcaatttaatttgaagtgggccctataaatatagccaagtcagtatcaaatagcaagcatgcctatgtggcattctccttac |
30471579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 30473771 - 30473644
Alignment:
| Q |
174 |
tttactgttaaattaatcaaattgataaacatgatt-attgattaattaatcaatttaatttgaagtgggccctataaa-tatagccaagtcagcatcaa |
271 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |
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| T |
30473771 |
tttactgttgaattaatcaaattgataaacatgatttattgatgagttaatcaatttaattttaagcgggccctataaactatagccaagttagcatcaa |
30473672 |
T |
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| Q |
272 |
agagcaagcatgcctatgtggcattctc |
299 |
Q |
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| T |
30473671 |
atagcaagcatgcctatgtggcattctc |
30473644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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