View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_low_6 (Length: 336)
Name: NF4509_low_6
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 46462914 - 46463227
Alignment:
| Q |
14 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
113 |
Q |
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| T |
46462914 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgttaagggtac |
46463013 |
T |
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| Q |
114 |
ctcccttgtgtattagatttctgttctatagggaatgaattaaaatctgtagatttttgttagaaaccaatatatggaactgtgtatattgtcatatagt |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463014 |
ctcccttgtgtaatagatttctgttctatagggaatgaattaaaatctgtagatttttgttagaaaccaatatatggaactgtgtatattgtcatatagt |
46463113 |
T |
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| Q |
214 |
ttcttctttgagannnnnnnaattatccttttttcaagtgaatgtaatagttcccttatacttgaaaagaaatcttctaatatcttccacttgaaatttc |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463114 |
ttcttctttgagatttttttaattatccttttttcaagtgaatgtaatagttctcttatacttgaaaagaaatcttctaatatcttccacttgaaatttc |
46463213 |
T |
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| Q |
314 |
tacttttgcctatg |
327 |
Q |
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|||||||||||||| |
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| T |
46463214 |
tacttttgcctatg |
46463227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 46451946 - 46452067
Alignment:
| Q |
14 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451946 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
46452045 |
T |
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| Q |
114 |
ctcccttgtgtattagatttct |
135 |
Q |
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|||||||||||| ||||||||| |
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| T |
46452046 |
ctcccttgtgtaatagatttct |
46452067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 46344610 - 46344489
Alignment:
| Q |
14 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46344610 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgttaagggtac |
46344511 |
T |
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| Q |
114 |
ctcccttgtgtattagatttct |
135 |
Q |
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|||||||||||| ||||||||| |
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| T |
46344510 |
ctcccttgtgtaatagatttct |
46344489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 46466336 - 46466447
Alignment:
| Q |
14 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
113 |
Q |
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||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
46466336 |
agtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgttaagggtac |
46466435 |
T |
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| Q |
114 |
ctcccttgtgta |
125 |
Q |
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|||||||||| |
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| T |
46466436 |
tgcccttgtgta |
46466447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 46471541 - 46471652
Alignment:
| Q |
14 |
agtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtac |
113 |
Q |
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||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
46471541 |
agtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgttaagggtac |
46471640 |
T |
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| Q |
114 |
ctcccttgtgta |
125 |
Q |
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|||||||||| |
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| T |
46471641 |
tgcccttgtgta |
46471652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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