View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4509_low_7 (Length: 297)

Name: NF4509_low_7
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4509_low_7
NF4509_low_7
[»] chr6 (14 HSPs)
chr6 (3-203)||(26853827-26854027)
chr6 (1-203)||(27651973-27652172)
chr6 (1-128)||(26631700-26631826)
chr6 (1-128)||(26737675-26737801)
chr6 (1-138)||(26966334-26966471)
chr6 (1-82)||(27713879-27713960)
chr6 (4-87)||(31289538-31289621)
chr6 (1-69)||(26890749-26890817)
chr6 (1-88)||(27422330-27422417)
chr6 (201-271)||(26853733-26853803)
chr6 (97-203)||(26890639-26890743)
chr6 (203-256)||(27702302-27702355)
chr6 (203-256)||(27714069-27714122)
chr6 (203-256)||(26890194-26890247)
[»] chr8 (3 HSPs)
chr8 (1-83)||(29269745-29269827)
chr8 (203-256)||(29269962-29270015)
chr8 (113-203)||(29269846-29269936)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-82)||(17984-18065)
scaffold0349 (203-256)||(17822-17875)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-88)||(64946-65033)
[»] chr4 (5 HSPs)
chr4 (74-180)||(18682934-18683040)
chr4 (79-182)||(18650517-18650620)
chr4 (200-247)||(5083225-5083272)
chr4 (74-155)||(18692248-18692329)
chr4 (203-256)||(18692404-18692457)
[»] chr1 (1 HSPs)
chr1 (109-202)||(26139434-26139527)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 26854027 - 26853827
Alignment:
Q  3 ttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctcagacgctttcaagtt 102  Q
    ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||| ||||| ||| ||| ||||||    
T  26854027 ttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttcggtctcggacacttccaagtt 26853928  T
Q  103 ctgactttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttgaacatgttgattccaatttctgta 202  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||   |||||||||||||| ||||||||| ||||    
T  26853927 ctgactttcatctgatttactctttccataagggttggtgaatatcacatcctccttcgtgcttccttcattcttgaacatgttggttccaatttgtgta 26853828  T
Q  203 c 203  Q
    |    
T  26853827 c 26853827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27651973 - 27652172
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctcagacgctttcaag 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| | ||  |||||||||||||||||||   ||||||||||||||||  ||| ||||    
T  27651973 atttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctgtctcagaaacttccaag 27652072  T
Q  101 ttctgactttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttgaacatgttgattccaatttctg 200  Q
    ||||||  |||||||  ||| ||||||| || ||||| |||||||||| ||||||| | |||||||| ||   |||||||||||| ||||||||||| ||    
T  27652073 ttctgatcttcatcttcttttctctttctataaggataggtgaatatcacatcctcttctgtgcttcttt---tcttgaacatgtggattccaatttgtg 27652169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26631826 - 26631700
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctcagacgctttcaag 100  Q
    |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||| |||  |||||||||||||| ||  ||| | ||    
T  26631826 atttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctgtctcggaaacttccgag 26631727  T
Q  101 ttctgactttcatctgatttactctttc 128  Q
    ||| ||  ||||||||| ||||||||||    
T  26631726 ttcggatcttcatctga-ttactctttc 26631700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26737801 - 26737675
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctcagacgctttcaag 100  Q
    |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||| |||  |||||||||||||| ||  ||| | ||    
T  26737801 atttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctgtctcggaaacttccgag 26737702  T
Q  101 ttctgactttcatctgatttactctttc 128  Q
    ||| ||  ||||||||| ||||||||||    
T  26737701 ttcggatcttcatctga-ttactctttc 26737675  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26966471 - 26966334
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctcagacgctttcaag 100  Q
    ||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||||| |||||||||||  ||||||||| ||||  |  ||| | ||    
T  26966471 atttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttctatctcgaaaacttccgag 26966372  T
Q  101 ttctgactttcatctgatttactctttccattaggatt 138  Q
    ||||||  ||||||||  |||||||||| || ||||||    
T  26966371 ttctgatcttcatctgcattactctttctataaggatt 26966334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27713879 - 27713960
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttct 82  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||  |||||||||    
T  27713879 atttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 31289621 - 31289538
Alignment:
Q  4 tggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctc 87  Q
    ||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||  ||| ||||||||||    
T  31289621 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgtctc 31289538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26890817 - 26890749
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctg 69  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | ||||||||||||    
T  26890817 atttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctg 26890749  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27422330 - 27422417
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctca 88  Q
    ||||||||||||| || ||||||||||||| | ||||||||| || ||||||||||||||||||| |||||   ||||||||||||||    
T  27422330 atttggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctgtctca 27422417  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 26853803 - 26853733
Alignment:
Q  201 tacaactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacggaatttgtagtgtgcgc 271  Q
    |||||||| ||||||||||||||| ||  |||||||||||||||||||||||| || ||||| ||||||||    
T  26853803 tacaactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtggtgtgcgc 26853733  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 26890743 - 26890639
Alignment:
Q  97 caagttctgactttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttgaacatgttgattccaatt 196  Q
    ||||||||||| |||||||| ||  |||||| ||| || |||||||| |||| |||||||||| |||||||||||  || ||||||  ||||||||||||    
T  26890743 caagttctgaccttcatctggtt--ctctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatt 26890646  T
Q  197 tctgtac 203  Q
    | |||||    
T  26890645 tgtgtac 26890639  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 27702302 - 27702355
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||    
T  27702302 caactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacgga 27702355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 27714069 - 27714122
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||||||||||||||||| ||  || ||||||||||||||| ||||||||    
T  27714069 caactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacgga 27714122  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 26890247 - 26890194
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||| || |||||    
T  26890247 caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacgga 26890194  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29269745 - 29269827
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctg 83  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||  ||||||||||    
T  29269745 atttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctg 29269827  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 29269962 - 29270015
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  29269962 caactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacgga 29270015  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 29269846 - 29269936
Alignment:
Q  113 tctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttgaacatgttgattccaatttctgtac 203  Q
    |||||||||||| ||| || || ||||||||||| |||||||||  |  ||||||||||| | ||||||| || |||||||| || |||||    
T  29269846 tctgatttactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttattgaacacgtagattccaaattgtgtac 29269936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18065 - 17984
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttct 82  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||  |||||||||    
T  18065 atttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 17875 - 17822
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||||||||||||||||| ||  || ||||||||||||||| ||||||||    
T  17875 caactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacgga 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 65033 - 64946
Alignment:
Q  1 atttggcagaaaagtgtttttacacaagaagaacttattaatcactagagccatacagtgttgttgctgctgtacaagttctgtctca 88  Q
    ||||||||||||| || ||||||||||||| | ||||||||| || ||||||||||||||||||| |||||   ||||||||||||||    
T  65033 atttggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctgtctca 64946  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 18682934 - 18683040
Alignment:
Q  74 acaagttctgtctcagacgctttcaagttctgactttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcg 173  Q
    |||||||||||||| ||  ||| ||||||||||  |||||||||||| ||||||| || ||||||| |||||||| |||||| || | |||||  ||||     
T  18682934 acaagttctgtctcggaaacttccaagttctgatcttcatctgattttctctttctataaggattgatgaatatcacatcctgctctatgcttattttct 18683033  T
Q  174 tcttgaa 180  Q
    |||||||    
T  18683034 tcttgaa 18683040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 18650517 - 18650620
Alignment:
Q  79 ttctgtctcagacgctttcaagttctgactttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttg 178  Q
    ||||||||||||  ||| |||| |||||  |||||||||||| || |||| || |||||||||||||||| |||||| || | |||| | |||| |||||    
T  18650517 ttctgtctcagaaacttacaagctctgatattcatctgattttctgtttctataaggattggtgaatatcacatcctgctctatgctgcttttcttcttg 18650616  T
Q  179 aaca 182  Q
    ||||    
T  18650617 aaca 18650620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 5083272 - 5083225
Alignment:
Q  200 gtacaactgagctgcaaagcatatcgttgatcactgccctttcgaaca 247  Q
    ||||||||||||||||||||||||| ||  ||||||||||||| ||||    
T  5083272 gtacaactgagctgcaaagcatatcattactcactgccctttcaaaca 5083225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 18692248 - 18692329
Alignment:
Q  74 acaagttctgtctcagacgctttcaagttctgactttcatctgatttactctttccattaggattggtgaatatcgcatcct 155  Q
    ||||||| |||||| ||  ||| |||||||||   |||||||||||| ||||||| || ||||||| |||||||| ||||||    
T  18692248 acaagttttgtctctgaaacttccaagttctgttcttcatctgattttctctttctataaggattgatgaatatcacatcct 18692329  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 18692404 - 18692457
Alignment:
Q  203 caactgagctgcaaagcatatcgttgatcactgccctttcgaacagccaacgga 256  Q
    |||||||| |||||||||||||  |  |||||||||||||||||| ||||||||    
T  18692404 caactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacgga 18692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 26139527 - 26139434
Alignment:
Q  109 ttcatctgatttactctttccattaggattggtgaatatcgcatcctcctttgtgcttcctttcgtcttgaacatgttgattccaatttctgta 202  Q
    ||||||| |||| |||||||||| |||||| |||||||   |||||||||   |||||| ||||  ||||||||| | ||||||||||| ||||    
T  26139527 ttcatctaattttctctttccataaggattagtgaatacgacatcctcctccatgcttcttttctccttgaacatatggattccaatttgtgta 26139434  T

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