View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4509_low_9 (Length: 289)
Name: NF4509_low_9
Description: NF4509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4509_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 24410071 - 24410339
Alignment:
| Q |
10 |
acatcatcatatatgtgaaggttaggattacataggattacctaagctaatttatgagtaatctcattaaaccgtctcttattaaactcaaataatgtcg |
109 |
Q |
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| T |
24410071 |
acatcatcatatatgtgaaggctaggattacataggactacttaagctaatttgtgagtaaccccattaaactgtctcttattaaactcgaataatgtcg |
24410170 |
T |
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| Q |
110 |
gttaaattaacggtcatagatgttagtaattgtattaccaaaccacgtatactgccgcttaagtagctaacaagctttaattaaagatggagtaagttaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24410171 |
gttaaattaacggtcatagatgttagtaattgtattaccaaaccacgtatactcccgcttaagtagctaacaagctttaattaaagatggagtaagttaa |
24410270 |
T |
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| Q |
210 |
aaatttaagttgggc-------tttactgttaaagtgaaaaataatgaggttttatcatatgcatcatt |
271 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24410271 |
aaatttaagttgggctttactatttactgttaaagtgaaaaataatgaggttatatcatatgcatcatt |
24410339 |
T |
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