View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510-Insertion-4 (Length: 898)
Name: NF4510-Insertion-4
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 851
Target Start/End: Complemental strand, 7376970 - 7376123
Alignment:
| Q |
7 |
accatcggccttcaaaataaaaccatccagacaaaagggtaccaggaaatccatccagaaggattattggcatgggctataaatnnnnnnnnnnnnncta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7376970 |
accatcggccttcaaaataaaaccatccagacaaaagggtaccaggaaatccatccagaaggattattggcatgggctataaataaaaaacaaaaaacta |
7376871 |
T |
|
| Q |
107 |
ggggaacataaatataaactatgtagaagtaaagatacatgaaattttataaaagttttatttttatattcttaaatattgttattttccatccaaaaag |
206 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7376870 |
ggggaacataaatataaactatgtagaagaaaagatacatgaaattttattaaagttttatttttatattcttaaatattgtcattttccatccaaaaag |
7376771 |
T |
|
| Q |
207 |
ttctagcggcatagcttagtgcccgtttatcttatattcatatgtataaataatgtaaattgaaaaccagttcaagggcactgatcatatatcatccatg |
306 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7376770 |
ttctagcggcatagctcagtgcccgtttgccttatattcatatgtataaataatctaaattgaaaaccagttcaagggcactgaccatatatcatccatg |
7376671 |
T |
|
| Q |
307 |
gttcatcaaatatgacattttctttgtcaaaagtcttgatcaaacttaaccatataaaaatcattatcattatccatgatttcaaaatcacacaaccaga |
406 |
Q |
| |
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||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
7376670 |
gtttatcaaatatgacattttctttgtcaga-gtcttgatcaaacttaacgatataaaaatcattatcattatccatgatttcaaaatcacacaatcaaa |
7376572 |
T |
|
| Q |
407 |
aaaccggtgattagccacggttattttaccgtggctaatagccgaccgtggctaatcacaggttttctgatagtgtcatgagttagtttccacacccttt |
506 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
7376571 |
aaaccgatgattagccacggttattttaccgtggctaatagccgactgtggctaatcaccaattttctgatcgtgtcatgagtgagtttccacacccttt |
7376472 |
T |
|
| Q |
507 |
tcaatctatcgttcatcatgatggaacctatttacttttggaagtagtccgttatcatttgtgttccatgtgaacgtaagtttttgatttaaaagtgagt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7376471 |
tcaatctatcgttcatcatgatggaacctatttacttttggaagtagcccgttatcatttgtgttccatgtgaacgtaagtttttggtttaaaagtgagt |
7376372 |
T |
|
| Q |
607 |
attttcttggattaggagctcctcggtggaggtatatttataac-nnnnnnnnggtacaatatttgtaacatttttaactgatctatttatcttaaaacg |
705 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7376371 |
attttctcggattaggagctcctcggtggaggtatatttataacattttttttggtacaatatttgtaacatttttaactgatctatttatcttaaaacg |
7376272 |
T |
|
| Q |
706 |
gtatatttgaatttaattgaggttttttaacaaattttatttgacttcaatatcatatcc-nnnnnnnnattcctttatgg-aaactattgtttttattt |
803 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
7376271 |
atatatctgaatttaattgaggttttttaacaaattttatttgacttcaatatcatatcctttttttttattcctttatggaaaactattgtttttattt |
7376172 |
T |
|
| Q |
804 |
aaattggtaaaaatgtttaaag-aaaaagaaatggtgataaatatggat |
851 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7376171 |
aaattggtaaaaatgtttaaagaaaaaagaaatggtgataaatatggat |
7376123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 39009430 - 39009377
Alignment:
| Q |
340 |
tcttgatcaaacttaaccatataaaaatcattatcattatccatgatttcaaaa |
393 |
Q |
| |
|
|||||||| || || ||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
39009430 |
tcttgatcgaatttgaccatataaaagccattgtcattatccatgatttcaaaa |
39009377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 3662862 - 3662915
Alignment:
| Q |
340 |
tcttgatcaaacttaaccatataaaaatcattatcattatccatgatttcaaaa |
393 |
Q |
| |
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|||||||| || || ||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
3662862 |
tcttgatcgaatttgaccatataaaagccattgtcattatccatgatttcaaaa |
3662915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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