View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510-Insertion-5 (Length: 740)
Name: NF4510-Insertion-5
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 48979973 - 48979472
Alignment:
| Q |
8 |
agctgctgactcgttggttcaatagctcacaacatgcatagtgtcaacgtgtgtgcttctgatccaacgatgcgggagctgcattccagtcgtcactgtc |
107 |
Q |
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| T |
48979973 |
agctgctgactcgttggttcaatagctcacaacatgcatagtgtcaacgtgtgtgcttctgatccaacgatgcgggagctgcattccagtcgtcactgtc |
48979874 |
T |
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| Q |
108 |
atgtcttggactgaaggggcctcttcatcgcctccagcaactatatcttcataattattaccttctaactctaatattagtatgtatttaaatag----- |
202 |
Q |
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| T |
48979873 |
atgtcttggactgaaggggcctcttcatcgcctccagcaactatatcttcataattattaccttctaactctaatattagtatgtatttaaatagtttat |
48979774 |
T |
|
| Q |
203 |
----------------cttatcattgtttaatttgcagcgtgtgagatataatgattcatgcatgaagcgtcactttgtgtatgatcttttagaacatgt |
286 |
Q |
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| T |
48979773 |
tctttatgcgaaatttcttatcattgtttaatttgcagcgtgtgagatataatgatt----catgaagcgtcactttgtgtatgatcttttagaacatga |
48979678 |
T |
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| Q |
287 |
acactttcccaagtgtaagtgctagcactatcaatgttgtatatgaaattaaagaaaaccttcattttatattcgtnnnnnnnnntcattttgtaaatta |
386 |
Q |
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| T |
48979677 |
acactttcccaagtgtaagtgctagcactatcaatgttgtatatgaaattaaagaaaaccttcattttatattcgt-aaaaaaaatcattttgtaaatta |
48979579 |
T |
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| Q |
387 |
ctactaatctactatcgcctaaatttatcttactttttaatgatgtacaacatattaataatctttattttcttgtatatacttattcttggcaggaaac |
486 |
Q |
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| T |
48979578 |
ctactaatctactatcgcctaaatttatcttactttttaatgatgtacagcatattaataatctttattttcttgtatatacttattcttggcaggaaac |
48979479 |
T |
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| Q |
487 |
aattcca |
493 |
Q |
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| T |
48979478 |
aattcca |
48979472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 542 - 714
Target Start/End: Complemental strand, 48979413 - 48979241
Alignment:
| Q |
542 |
ctaactagtgtttgggaatgaatgagcatttgaaatgagaatgagtttgagaaagattgtacttatgaagagagaaaaagcttagagggatctaaacaga |
641 |
Q |
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| T |
48979413 |
ctaactagtgtttgggaatgattgagcatttgaaatgagaatgagttagagaaagattgtacttatgaagagagaaaaatcttagagggatctaaacaga |
48979314 |
T |
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| Q |
642 |
gttgtggctaatacattcttttcttttcaaccaagcttatacacaaccccatgaacctccctactcttttcat |
714 |
Q |
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| T |
48979313 |
gttgtggctaatacattcttttcttttcaaccaagcttatacacaaccccatgaacctccctactcttttcat |
48979241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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