View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510-Insertion-6 (Length: 638)

Name: NF4510-Insertion-6
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510-Insertion-6
NF4510-Insertion-6
[»] chr4 (1 HSPs)
chr4 (8-638)||(18539722-18540348)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 638
Target Start/End: Original strand, 18539722 - 18540348
Alignment:
Q  8 atgaaattttcgtatcaccttatttatggccagtttagctgtattcattattaaccaaacattatccaagctagatagtggtgtaacataaaagaaggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18539722 atgaaattttcgtatcaccttatttatggccagtttagctgtattcattattaaccaaacattatccaagctagatagtggtgtaacataaaagaaggaa 18539821  T
Q  108 aaaatatctacatttaaacaatagggaagaaagtagaagtttctatttgctacgcgcagctagacctatataaccctacaaaaccagtgcatttagaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18539822 aaaatatctacatttaaacaatagggaagaaagtagaagtttctatttgctacccgcagctagacctatataaccctacaaaaccagtgcatttagaaaa 18539921  T
Q  208 tggtccattcacatgtattgaaaaagatttaattgtacatttgatcgatcaactaatttttcaatgaaaattgctctcatatnnnnnnncaaatttgaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||       |||||||||||    
T  18539922 tggtccattcacatgtattgaaaaagatttaattgtacatttgatcgatctcctaatttttcaatgaaaattgctctcatataaaaaaacaaatttgaca 18540021  T
Q  308 caattttattgttaaaatttatgtaattacaannnnnnnaacaatttatnnnnnnnnttattattcatggatatttgtaaaaatatctgtgaatacttaa 407  Q
    ||||||||||||||||||||||||||||||||       ||||||||||        |||||||||||||||||||||  ||||||| ||||||||||||    
T  18540022 caattttattgttaaaatttatgtaattacaatttttttaacaatttataaaaaaatttattattcatggatatttgt--aaatatccgtgaatacttaa 18540119  T
Q  408 aaatttgttgatagcctatcttgtggatactcgcacggatatgagatggacataaatatcatatttatgcaacagagtgaaaatgaatatcatacnnnnn 507  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  18540120 aaatttgttgatagcctatctagtggatactcacacagatatgagatggacataaatatcatatttatgcaacagagtgaaaatgaatatcatacttttt 18540219  T
Q  508 nnnnnnngaatgacaaatttataataaccaagtccttgttgaggcgaacagagaccagcaagacaaaaattatatagcaaaaggcgtagtatatagcaaa 607  Q
            |  |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18540220 tttttt--atcgacaaatttataataaccaagtccttgccgaggcgaacagagaccagcaagacaaaaattatatagcaaaaggcgtcatatatagcaaa 18540317  T
Q  608 acactcaaaagaaacatacatggtacatcat 638  Q
    ||||||||||||||||||||  |||||||||    
T  18540318 acactcaaaagaaacatacacagtacatcat 18540348  T

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