View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510-Insertion-7 (Length: 386)

Name: NF4510-Insertion-7
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510-Insertion-7
NF4510-Insertion-7
[»] chr5 (2 HSPs)
chr5 (227-306)||(188130-188208)
chr5 (230-302)||(15446053-15446124)
[»] chr6 (1 HSPs)
chr6 (230-302)||(28669167-28669238)
[»] chr2 (1 HSPs)
chr2 (230-309)||(19245462-19245540)
[»] chr3 (1 HSPs)
chr3 (237-302)||(26207465-26207529)
[»] chr4 (1 HSPs)
chr4 (227-277)||(18437757-18437806)
[»] scaffold0684 (1 HSPs)
scaffold0684 (230-302)||(5406-5477)
[»] scaffold0163 (1 HSPs)
scaffold0163 (230-302)||(2641-2712)
[»] chr8 (1 HSPs)
chr8 (230-302)||(31148652-31148723)
[»] chr1 (1 HSPs)
chr1 (230-302)||(22789058-22789129)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 188208 - 188130
Alignment:
Q  227 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacat 306  Q
    |||||||||||||||| ||||||||||||| | |||||||| | ||||||||||| |||  |||||||||||||||||||    
T  188208 aaatgatgaagatgaaagtgttgatatgatggaagataatccatataattgacga-tttattcgtgatttatgattacat 188130  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 15446053 - 15446124
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    ||||||||| ||||||||||||||||  || ||||||| | |||||||| ||  ||| |||||||||||||||    
T  15446053 tgatgaagacgaacgtgttgatatgacgggggataatccatataattgaaga-attcttcgtgatttatgatt 15446124  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 28669167 - 28669238
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    ||||||||| |||| |||||||||||| || ||||||||| ||||||||||| |||| |||||||||||||||    
T  28669167 tgatgaagacgaacatgttgatatgatgggggataatctatataattgacga-tttcttcgtgatttatgatt 28669238  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 19245462 - 19245540
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacatcta 309  Q
    ||||||||| ||||||||||||||||| || ||||||| | ||||||||| | |||| ||||||||||||||| ||||||    
T  19245462 tgatgaagacgaacgtgttgatatgataggggataatccatataattgac-aatttcttcgtgatttatgattgcatcta 19245540  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 26207465 - 26207529
Alignment:
Q  237 gatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    |||| |||||||||||||||||| ||||||| | ||||||||||| |||| |||||||||||||||    
T  26207465 gatggacgtgttgatatgattggggataatccatataattgacga-tttcttcgtgatttatgatt 26207529  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 18437806 - 18437757
Alignment:
Q  227 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattg 277  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  18437806 aaatgatgaagatgaacgtgttgatatgattgg-gataatccatataattg 18437757  T

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Target: scaffold0684 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 5477 - 5406
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  5477 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 5406  T

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Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 2641 - 2712
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  2641 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 2712  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 31148652 - 31148723
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||| |||  ||| |||||||||||||||    
T  31148652 tgatgaagatgaacatgttgatatgatggatgataatccatataattggcga-cttcttcgtgatttatgatt 31148723  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 22789058 - 22789129
Alignment:
Q  230 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 302  Q
    |||||||||||||| |||||| ||||| || ||||||||| ||||||| |||  ||| | |||||||||||||    
T  22789058 tgatgaagatgaacttgttgacatgatgggggataatctatataattggcga-cttctttgtgatttatgatt 22789129  T

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