View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510_high_4 (Length: 375)

Name: NF4510_high_4
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510_high_4
NF4510_high_4
[»] chr3 (2 HSPs)
chr3 (261-375)||(24410317-24410431)
chr3 (17-106)||(24410594-24410685)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 24410431 - 24410317
Alignment:
Q  261 ttaagcaataccgaagaacaccggttatcatgacctagatgatagaagttaatctgagttcttaactctattttagtgtgccttacaattacaatgatgc 360  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24410431 ttaagcaataccgaagaacactgattatcatgacctagatgatagaagctaatctgagtttttaactctattttagtgtgccttacaattacaatgatgc 24410332  T
Q  361 atatgataaaacctc 375  Q
    |||||||| ||||||    
T  24410331 atatgatataacctc 24410317  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 24410685 - 24410594
Alignment:
Q  17 ataaagtactaaagcaggttggtcctggtcctgaaacatggaccannnnnnnaattctagtgataaac--tattcaagcctatattatttca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||  ||||||||||||||||| ||||    
T  24410685 ataaagtactaaagcaggttggtcctggtcctgaaacatggaccattttattaattctagtgataaactatattcaagcctatattacttca 24410594  T

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