View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510_high_5 (Length: 373)

Name: NF4510_high_5
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510_high_5
NF4510_high_5
[»] chr7 (9 HSPs)
chr7 (154-357)||(45703740-45703942)
chr7 (1-122)||(45703613-45703739)
chr7 (95-138)||(4860908-4860951)
chr7 (95-138)||(18411834-18411877)
chr7 (96-138)||(21644214-21644256)
chr7 (220-268)||(3323139-3323187)
chr7 (220-264)||(16883228-16883272)
chr7 (220-264)||(24263065-24263109)
chr7 (220-268)||(25407196-25407244)
[»] chr3 (10 HSPs)
chr3 (101-149)||(40771336-40771384)
chr3 (220-268)||(22624330-22624378)
chr3 (219-268)||(54190290-54190339)
chr3 (220-264)||(2673962-2674006)
chr3 (220-268)||(6305093-6305141)
chr3 (220-264)||(8515395-8515439)
chr3 (220-268)||(10097157-10097205)
chr3 (220-268)||(10204043-10204091)
chr3 (220-268)||(10611128-10611176)
chr3 (220-264)||(32478641-32478685)
[»] chr6 (4 HSPs)
chr6 (220-264)||(33332818-33332862)
chr6 (220-268)||(35204414-35204462)
chr6 (220-268)||(13880521-13880569)
chr6 (220-264)||(14739314-14739358)
[»] chr5 (6 HSPs)
chr5 (95-138)||(24557452-24557495)
chr5 (95-138)||(24598484-24598527)
chr5 (96-138)||(27448000-27448042)
chr5 (96-138)||(43595298-43595340)
chr5 (96-138)||(43628092-43628134)
chr5 (220-264)||(31398734-31398778)
[»] chr8 (5 HSPs)
chr8 (96-138)||(26299550-26299592)
chr8 (220-264)||(10686006-10686050)
chr8 (220-268)||(16755611-16755659)
chr8 (220-268)||(28329677-28329725)
chr8 (220-264)||(35743690-35743734)
[»] chr4 (1 HSPs)
chr4 (95-145)||(47745865-47745914)
[»] chr2 (6 HSPs)
chr2 (96-138)||(25394063-25394105)
chr2 (220-268)||(2737987-2738035)
chr2 (220-264)||(19347579-19347623)
chr2 (220-268)||(20053111-20053159)
chr2 (220-268)||(39684030-39684078)
chr2 (220-268)||(45569172-45569220)
[»] chr1 (3 HSPs)
chr1 (109-155)||(36295363-36295409)
chr1 (220-268)||(2397574-2397622)
chr1 (220-268)||(9523510-9523558)
[»] scaffold0078 (1 HSPs)
scaffold0078 (97-138)||(35188-35229)
[»] scaffold0197 (1 HSPs)
scaffold0197 (220-264)||(16051-16095)
[»] scaffold0023 (1 HSPs)
scaffold0023 (220-268)||(49557-49605)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 154 - 357
Target Start/End: Original strand, 45703740 - 45703942
Alignment:
Q  154 tttctaagaaatcatcaatcataatgagcaaatagaaactattgtcaagatatgttgctattgtcagaccccaaagatttgaacgaacatactcaaaagg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  45703740 tttctaagaaatcatcaatcataatgagcaaatagaaactattgtcaagatatgttgctattgtcagaccccaaag-tttgaacgaacatattcaaaagg 45703838  T
Q  254 tctactagaattatgagtgtcacttacttaaatgtatgttgtttctttaatatgcaattatcataaaattctaattcctctaatttaacattccctaaca 353  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45703839 tctactagaattatgaatgtcacttacttaaatgtatgttgtttctttaatatgcaattatcataaaattccaattcctctaatttaacattccctaaca 45703938  T
Q  354 caca 357  Q
    ||||    
T  45703939 caca 45703942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45703613 - 45703739
Alignment:
Q  1 aaaactcattaaaagatcctaaaacaaa-----cttgaggtcgttgttagttcttaatactttcaatttagtttatgagtgattctctataagaatacat 95  Q
    ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  45703613 aaaactcattaaaagatcctaaaacaaattaaacttgaggtcgttgttagttcttaatactttcaatttagtttctgagtgattctctataagaatatat 45703712  T
Q  96 cattccttaaactttttaaaggtgtca 122  Q
    |||||||||||||||||||||||||||    
T  45703713 cattccttaaactttttaaaggtgtca 45703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 4860908 - 4860951
Alignment:
Q  95 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  4860908 tcattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 4860951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 18411834 - 18411877
Alignment:
Q  95 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  18411834 tcattccttaaacttttaaaatgtgtcacttttttttttcaaaa 18411877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 21644214 - 21644256
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  21644214 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 21644256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 3323139 - 3323187
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  3323139 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 3323187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 16883228 - 16883272
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  16883228 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 16883272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 24263109 - 24263065
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  24263109 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 24263065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 25407244 - 25407196
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  25407244 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 25407196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 40771336 - 40771384
Alignment:
Q  101 cttaaactttttaaaggtgtcacttttatttttcaaaatatgaactcat 149  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  40771336 cttaaacttttcaaatgtgtcacttttatgtttcaaaatatgaactcat 40771384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 22624330 - 22624378
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    |||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  22624330 gaccccaaagatctgaatgaacatactcaaaaggcctactagatttatg 22624378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 54190339 - 54190290
Alignment:
Q  219 agaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    |||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  54190339 agaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 54190290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 2674006 - 2673962
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  2674006 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 2673962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 6305141 - 6305093
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  6305141 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 6305093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 8515395 - 8515439
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  8515395 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 8515439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 10097157 - 10097205
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10097157 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10097205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 10204043 - 10204091
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10204043 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10204091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 10611128 - 10611176
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10611128 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 32478641 - 32478685
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  32478641 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 32478685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 33332862 - 33332818
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    |||||||||||| |||| | |||||||||||||||||||||||||    
T  33332862 gaccccaaagatctgaatgcacatactcaaaaggtctactagaat 33332818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 35204414 - 35204462
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| |||||    
T  35204414 gaccccaaagatccgaatgaacatactcaaaaggtctactagatttatg 35204462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 13880569 - 13880521
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  13880569 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 13880521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 14739358 - 14739314
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    |||||||||||| |||| | |||||||||||||| ||||||||||    
T  14739358 gaccccaaagatctgaatgcacatactcaaaaggcctactagaat 14739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 24557495 - 24557452
Alignment:
Q  95 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  24557495 tcattccttaaacttctcaaaggtgtcacttttgtttttcaaaa 24557452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 24598527 - 24598484
Alignment:
Q  95 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  24598527 tcattccttaaacttctcaaaggtgtcacttttgtttttcaaaa 24598484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 27448000 - 27448042
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  27448000 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 27448042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 43595298 - 43595340
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  43595298 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 43595340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 43628092 - 43628134
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  43628092 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 43628134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 31398778 - 31398734
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  31398778 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 31398734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 26299550 - 26299592
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  26299550 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 26299592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 10686050 - 10686006
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  10686050 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 10686006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 16755611 - 16755659
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  16755611 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 16755659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 28329725 - 28329677
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  28329725 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 28329677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 35743690 - 35743734
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  35743690 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 35743734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 47745914 - 47745865
Alignment:
Q  95 tcattccttaaactttttaaaggtgtcacttttatttttcaaaatatgaac 145  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  47745914 tcattccttaaacttttcaaatgtgtcac-tttatttttcaaaatgtgaac 47745865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 25394063 - 25394105
Alignment:
Q  96 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  25394063 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 25394105  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 2738035 - 2737987
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  2738035 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 2737987  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 19347579 - 19347623
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  19347579 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 19347623  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 20053111 - 20053159
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  20053111 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 20053159  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 39684078 - 39684030
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  39684078 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 39684030  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 45569220 - 45569172
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  45569220 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 45569172  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 36295409 - 36295363
Alignment:
Q  109 ttttaaaggtgtcacttttatttttcaaaatatgaactcattctctt 155  Q
    ||||||||||||||||||||| ||| ||||| ||||||||| |||||    
T  36295409 ttttaaaggtgtcacttttatgttttaaaatgtgaactcatactctt 36295363  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 2397574 - 2397622
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  2397574 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 2397622  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 9523558 - 9523510
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  9523558 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 9523510  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 35188 - 35229
Alignment:
Q  97 attccttaaactttttaaaggtgtcacttttatttttcaaaa 138  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||    
T  35188 attccttaaacttattaaaggtgtcacttttgttttttaaaa 35229  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 16095 - 16051
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaat 264  Q
    ||||||||||||  ||| | |||||||||||||||||||||||||    
T  16095 gaccccaaagatccgaatgcacatactcaaaaggtctactagaat 16051  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 49557 - 49605
Alignment:
Q  220 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 268  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  49557 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 49605  T

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