View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_high_7 (Length: 332)
Name: NF4510_high_7
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 122 - 322
Target Start/End: Original strand, 41714141 - 41714337
Alignment:
| Q |
122 |
gaataccttcaaagcaataagaaaatctcaaaatcaagagcaattacatgttttcttcttgtttaatgagaagaaagagcactctcaagctcttgtatta |
221 |
Q |
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| T |
41714141 |
gaataccttcaaagcaataagaaaatctcaaaatgaagagcaattacatgttttcttcttgtttaatgagaagaaagagcactctcaagctcttgta--- |
41714237 |
T |
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| Q |
222 |
tttatttatttcactaagaaaattcggaatcgacttattgtataaagtattaacttatttttggatagtaaattaaagtagacctgtagatagtacctat |
321 |
Q |
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| T |
41714238 |
-ttatttatttccctaagaaaattcggaatcgacttattgtataaagtattaacttatttttggatagtaaattaaagtagacttgtagatagtacctat |
41714336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 41714019 - 41714117
Alignment:
| Q |
17 |
acaattaagagggggaaaatcccacaagagtattaaacttatgctataaacaagtctgaaagatgtgc--atatatattatgcctaccttattccaact |
113 |
Q |
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| T |
41714019 |
acaattaagagggggaaaatcccacaagagtattaaacttatgctataaacaagtccgaaagatgtgcatatatatattatgcctaccttattccaact |
41714117 |
T |
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