View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_1 (Length: 630)
Name: NF4510_low_1
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 41107083 - 41107697
Alignment:
| Q |
1 |
tcatcatactaatatgtttaatactactcttaatgaatgtgaccttaatgatttgggnnnnnnnggttccaaatacacctgggctaataaccagagtgat |
100 |
Q |
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| T |
41107083 |
tcatcatactaatatatttaatactactcttaatgaatgtgaccttaatgatttgggtttttttggttctaaatacacctgggctaataaccagagtgat |
41107182 |
T |
|
| Q |
101 |
atggatcacataaaagagagactagacagattttgtgctaacactaactggattttatcttttcccagatacactaacaagcatctgctcaaatactcct |
200 |
Q |
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| T |
41107183 |
atggatcacataaaagagagactagacagattttgtgctaacactaactagattttatcttttcccagatacactaacaagcatctgctcaaatactcct |
41107282 |
T |
|
| Q |
201 |
cagatcataatcctatcatgctagacttctattcaaccggtgaatgctatattaaacataatcacaaaaagctcatcatatttgaacaaccatgggctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41107283 |
cagatcataatcctatcatgctagacttctattcaaccagtgaatgctatattaaacataatcacaaaaagctcatcatatttgaacaaccatgggctca |
41107382 |
T |
|
| Q |
301 |
agatgcatggagtaacaccattctcaagactgcctggaacaatacccaaagcaccaatatcattaaacttcaacacacattggatcatctatatgcttgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41107383 |
agatgcatggagtaacaccattctcaagactgcctggaacaatacccaaagcaccaatatcgttaaacttcaacacacattggatcatctatatgcttgg |
41107482 |
T |
|
| Q |
401 |
ggcagaaacaaatttggtgatttagccaataaaattaaaatcatccagacatctttggataaattaaagactcaagtcccttctcaagactgcatcaaac |
500 |
Q |
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| T |
41107483 |
ggcagaaacaaattttgtgatttagccaataaaattaaaatcatccagacatctttggataaattaaagactcaagtcccttctcaagactgcatcaaac |
41107582 |
T |
|
| Q |
501 |
aaatcaaggttatggagactactttggatgaatatctcaaacaagaagaattgtggtgggctcaaagggctaaggtccattggcttgaacatggagacca |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
41107583 |
aaatcaaggttatggagactactttggatgaatatctcaaacaagaagaattgtggcggactcaaagggctaaggtccattggcttcaacatggagacca |
41107682 |
T |
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| Q |
601 |
aaacacaaagatttt |
615 |
Q |
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||||||||||||||| |
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| T |
41107683 |
aaacacaaagatttt |
41107697 |
T |
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