View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_11 (Length: 370)
Name: NF4510_low_11
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 5540647 - 5540309
Alignment:
| Q |
20 |
aattgaattacgtagttttgatttaaattgacaattaaaacatagaccaagaagattattccttcaatttctttacatattttaattcaacatgttctca |
119 |
Q |
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| T |
5540647 |
aattgaattacgtagttttgatttaaattgacaattaaaacatagaccaagaagattattccttcaatttctttacatattt-aattcaacatgttctca |
5540549 |
T |
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| Q |
120 |
attttcctttttaaggtaccctacctgagcttcaaccaatctcattcttccatgaccgtattaactttttccttacaaactgacaataataaacaattca |
219 |
Q |
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| T |
5540548 |
attttcctttttaaggtaccctacctgagcttcaaccaatctcattcttccatgaccgtattaactttttccttacaaactgacaataataaacaattca |
5540449 |
T |
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| Q |
220 |
gctttgttctttttagtcctctctctgtagaagttttacgacatattgaggagcactaaaccgtcaattttatgatgctttatgttccatcaatcatact |
319 |
Q |
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| T |
5540448 |
gctttgttctttttagtcctctctctgtagaagttttacgacatattgaggagcattaaaccgtcaattttatgatgttttatgttccatcaatcatact |
5540349 |
T |
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| Q |
320 |
aagtaccagccaaaatttcaattttctcccctccatctct |
359 |
Q |
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|||||||| |||||||||||||||| |||||||||||||| |
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| T |
5540348 |
aagtaccaaccaaaatttcaattttttcccctccatctct |
5540309 |
T |
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