View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_14 (Length: 341)
Name: NF4510_low_14
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 1491253 - 1491372
Alignment:
| Q |
17 |
cacaaccagctccaaaagatcatccatggcgctacatgcctaatcatgctatgactcctcatatttctggaactaccattgatgcacaggtagtttattt |
116 |
Q |
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| T |
1491253 |
cacaaccagctccaaaagatcatccatggcgctacatgcctaatcatgctatgactcctcatatttctggaactaccattgatgcacaggtagtttattt |
1491352 |
T |
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| Q |
117 |
ttgacaaaattacttcactc |
136 |
Q |
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| T |
1491353 |
ttgacaaaattacttcactc |
1491372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 1491433 - 1491559
Alignment:
| Q |
197 |
gcctcacactttgcatgcatgcttttaaatgatagttttgaagcaaactgtagtgccatatactaggagaaatgaaaacaattatgtagcaccgacattt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1491433 |
gcctcacactttgcatgcatgcttttaaatgatagttttgaggcaaactgtagcgccatatactaggagaaatgaaaacaattatgtagcaccgacattt |
1491532 |
T |
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| Q |
297 |
catattgtaggcatgtctagtgtccaa |
323 |
Q |
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| T |
1491533 |
catattgtaggcgtgtctagtgtccaa |
1491559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 1495991 - 1496105
Alignment:
| Q |
17 |
cacaaccagctccaaaagatcatccatggcgctacatgcctaatcatgctatgactcctcatatttctggaactaccattgatgcacaggtagttta-tt |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
1495991 |
cacaaccagctccaaaagatcatccatggcgttacatgccaaaccatgcgatgactcctcatatttctggaactaccatagatgcacaggtagtttattt |
1496090 |
T |
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| Q |
116 |
tttgacaaaattact |
130 |
Q |
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| T |
1496091 |
tttgagaaaattact |
1496105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 1413591 - 1413682
Alignment:
| Q |
25 |
gctccaaaagatcatccatggcgctacatgcctaatcatgctatgactcctcatatttctggaactaccattgatgcacaggtagtttattt |
116 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1413591 |
gctccaaaagatcatccatggcgttacatgcctgatcatgccatgactcctcatatttctggaaccaccattgatgcacaggtagtttattt |
1413682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 8145343 - 8145376
Alignment:
| Q |
279 |
tatgtagcaccgacatttcatattgtaggcatgt |
312 |
Q |
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| T |
8145343 |
tatgtagcaccgacatttcatattgaaggcatgt |
8145376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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