View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_17 (Length: 308)
Name: NF4510_low_17
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_17 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 47 - 308
Target Start/End: Original strand, 23246837 - 23247097
Alignment:
| Q |
47 |
aagtcctacaaaagagaagagaaaattaagacaagatgcactattttacctcctacaacttactgtaaccaaaacaaggatagcagtagataaatgttct |
146 |
Q |
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| T |
23246837 |
aagtcctacaaaagagaagagaaaattaagacaagatacactattttacctcctacaacttagtataaccaaaacaaggatagcagtagataaatgttct |
23246936 |
T |
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| Q |
147 |
atgtgaaaagctgaaattccaactgaataggttatatttggaaaattccaaaattatattattttttcatatataataaaagtcatgagatgcactatat |
246 |
Q |
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| T |
23246937 |
atgtgaaaagctgaaattccaactgaataggttatatttggaaaattccaaaattatattcttttttcatatataataaaagtcatgagatgcactatat |
23247036 |
T |
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| Q |
247 |
gctcgattagcgatttaataattaacataaaaagctataaaaagaaattcctttttaatttt |
308 |
Q |
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| T |
23247037 |
gctcgattagtgatttaat-attcacataaaaagctataaaaagaaattcctttttaatttt |
23247097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 23251391 - 23251501
Alignment:
| Q |
189 |
aaattccaaaattatattattttttcatatataataaaagtcatgagatgcactatatgctcgattagcgatttaataattaacataaaaagctataaaa |
288 |
Q |
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| T |
23251391 |
aaattccaaaattatatt-ttctttcatatataataaaaaggatgagatgcactttacgcttgattagtgatttaataattcacat-aaaagctataaaa |
23251488 |
T |
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| Q |
289 |
agaaattcctttt |
301 |
Q |
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| T |
23251489 |
ataaattcctttt |
23251501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 23257389 - 23257481
Alignment:
| Q |
211 |
tttcatatataataaaagtcatgagatgcactatatgctcgattagcgatttaataattaacataaaaagctataaaaagaaattcctttttaattt |
307 |
Q |
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| T |
23257389 |
tttcatatataataaaagtc---agatgcactttaagcttgattagtgatttaataatccacat-aaaagctataaagagaaactccttttcaattt |
23257481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 23265847 - 23265908
Alignment:
| Q |
47 |
aagtcctacaaaagagaagagaaaattaagacaagatgcactattttacctcctacaactta |
108 |
Q |
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| T |
23265847 |
aagtcctacaaaagagaagagaagaataagacaagagacgctatattacctctttcaactta |
23265908 |
T |
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