View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510_low_18 (Length: 294)

Name: NF4510_low_18
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510_low_18
NF4510_low_18
[»] chr6 (13 HSPs)
chr6 (4-294)||(6525696-6525986)
chr6 (53-294)||(6464658-6464899)
chr6 (64-294)||(6473666-6473896)
chr6 (7-247)||(1842321-1842561)
chr6 (112-292)||(6496000-6496180)
chr6 (114-292)||(6462494-6462672)
chr6 (56-164)||(1832345-1832453)
chr6 (59-126)||(1836139-1836206)
chr6 (151-239)||(6527573-6527661)
chr6 (16-150)||(1846958-1847085)
chr6 (181-251)||(1846170-1846241)
chr6 (89-163)||(1846084-1846158)
chr6 (130-294)||(6504802-6504969)
[»] chr7 (1 HSPs)
chr7 (12-167)||(46382872-46383027)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 294
Target Start/End: Complemental strand, 6525986 - 6525696
Alignment:
Q  4 gaaggagggaatatgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtctaacaaaagagacagtggtttatgatttggtccag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  6525986 gaaggagggaatatgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtcgaacaaaagagacagtggtttatggtttggtccag 6525887  T
Q  104 ccgagtggaaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtgga 203  Q
    | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  | ||||||||||| |||||||||    
T  6525886 ctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgttctctgatgttatgtatgtgaagggacttgtgga 6525787  T
Q  204 gtggacattacatgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagt 294  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  6525786 gtggacattacctgctttaaaaagggatggtgttgaagagggttggaaggggtttgtttatgccttgcaagggatttatgataatgaaagt 6525696  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 53 - 294
Target Start/End: Complemental strand, 6464899 - 6464658
Alignment:
Q  53 ttggtgtactttggtctaacaaaagagacagtggtttatgatttggtccagccgagtggaaagaatgtaggcttgggattcagctcttaccattgcttcc 152  Q
    ||||||| |||||| ||||||| ||||||||||| ||||| |||| |||  | || ||||||||||||||||||||||||||||||||||||||||||||    
T  6464899 ttggtgttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttcc 6464800  T
Q  153 tatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaagggatggtgttggagagggttggaag 252  Q
     ||||||||| ||||||| ||  |||   | | ||||||||||||||||||||||||||| | |||||| || ||||| ||||||||||| || |||||     
T  6464799 aatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaa 6464700  T
Q  253 gggtttgtatatgccttacaaggaatttatgataatgaaagt 294  Q
    |||||||| ||||||||  ||||| |||||||||||||||||    
T  6464699 gggtttgtctatgccttggaaggagtttatgataatgaaagt 6464658  T

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Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 294
Target Start/End: Original strand, 6473666 - 6473896
Alignment:
Q  64 tggtctaacaaaagagacagtggtttatgatttggtccagccgagtggaaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaag 163  Q
    ||||||||||| ||||||||||| ||||| |||| ||| || |  |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  6473666 tggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaag 6473765  T
Q  164 tcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaagggatggtgttggagagggttggaaggggtttgtata 263  Q
    | || || || ||||   | ||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||| ||| || ||||| || ||||| ||    
T  6473766 ttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaaggtgttgaagaaggatggaaaggttttgtcta 6473865  T
Q  264 tgccttacaaggaatttatgataatgaaagt 294  Q
    ||| || ||||||||||||||||||||||||    
T  6473866 tgcattgcaaggaatttatgataatgaaagt 6473896  T

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Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 1842321 - 1842561
Alignment:
Q  7 ggagggaatatgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtctaacaaaagagacagtggtttatgatttggtccagccg 106  Q
    ||||| |||||||||||||||| ||||| |||||| |||||| | ||| |||| || ||||||||||||||||||| |||| |||| |||||||| || |    
T  1842321 ggaggaaatatgtatgagaaagagtttactaaaaataataaggttattagtgttctgtggtctaacaaaagagaca-tggtctatggtttggtcctgctg 1842419  T
Q  107 agtggaaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtg 206  Q
    |||||||||||||| |||| || ||||||||||||||| | || |||||||||||| | || | ||||||||  ||||||||||||| ||||||||||||    
T  1842420 agtggaaagaatgttggctcggcattcagctcttaccactactccctatttctgaaattttgtcctctgatgttaagtatgtgaagggacttgtggagtg 1842519  T
Q  207 gacatt-acatgctttaaaaagggatggtgttggagagggtt 247  Q
    ||||||  | | ||||| ||||||||||||||||||||||||    
T  1842520 gacattgcctttctttagaaagggatggtgttggagagggtt 1842561  T

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Target: chr6; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 6496180 - 6496000
Alignment:
Q  112 aaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatg-cgaagtatgtgaaggaacttgtggagtggaca 210  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||| ||||||| || ||| ||    
T  6496180 aaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgttctctgatgtcgaa-tatgtgaagcaacttgttgaatgggca 6496082  T
Q  211 ttacatgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaa 292  Q
    || | |||||| ||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  6496081 ttgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgccttacaaggaatttatgataaggaaa 6496000  T

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Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 114 - 292
Target Start/End: Original strand, 6462494 - 6462672
Alignment:
Q  114 agaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacatta 213  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||| || ||||||||||   | ||||||||| ||||||| || ||||||||     
T  6462494 agaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattgttctctgatgttgaatatgtgaagcaacttgttgaatggacattg 6462593  T
Q  214 catgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaa 292  Q
    | |||||| ||||| |||||||||| ||| || ||||| |||||||||||||| |||||||||||||||||||| ||||    
T  6462594 cctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgctttacaaggaatttatgataaggaaa 6462672  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 1832345 - 1832453
Alignment:
Q  56 gtgtactttggtctaacaaaagagacagtggtttatgatttggtccagccgagtggaaagaatgtaggcttgggattcagctcttaccattgcttcctat 155  Q
    |||| ||||||||| ||||||||||||||||| |||| |||||||| || ||||||||||||||| |||| || ||||||||||||||||| ||||||||    
T  1832345 gtgttctttggtcttacaaaagagacagtggtctatggtttggtcctgctgagtggaaagaatgtcggctcggcattcagctcttaccatttcttcctat 1832444  T
Q  156 ttctgaagt 164  Q
     ||| ||||    
T  1832445 ctcttaagt 1832453  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 1836139 - 1836206
Alignment:
Q  59 tactttggtctaacaaaagagacagtggtttatgatttggtccagccgagtggaaagaatgtaggctt 126  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||    
T  1836139 tactttggtctaacaaaagagacagtggtctatggtttggtccagctgagtggaaagaatgtcggctt 1836206  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 6527661 - 6527573
Alignment:
Q  151 cctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaagggatggtgttgg 239  Q
    |||||||||||||| || || |||||||| ||||||||||||||||| || || |||||||||| ||| ||||||||||| ||| ||||    
T  6527661 cctatttctgaagttttgttttctgatgcaaagtatgtgaaggaactagttgaatggacattacctgccttaaaaagggaaggtattgg 6527573  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 1846958 - 1847085
Alignment:
Q  16 atgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtctaacaaaagagacagtggtttatgatttggtccagccgagtggaaag 115  Q
    ||||||||||||||||||| ||| || |||||| | ||| |||||||| ||       ||||||||| || | |||| |||||||| ||  |||||||||    
T  1846958 atgtatgagaaagtgtttactaacaataataaggttattagtgtacttagg-------aaagagacaatgctctatggtttggtccggctcagtggaaag 1847050  T
Q  116 aatgtaggcttgggattcagctcttaccattgctt 150  Q
    ||||| |||| || |||||||||||||||||||||    
T  1847051 aatgtcggctcggaattcagctcttaccattgctt 1847085  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 1846170 - 1846241
Alignment:
Q  181 aagtatgtgaaggaacttgtggagtggacattacatgctttaaaaaggg-atggtgttggagagggttggaa 251  Q
    ||||||||||||| ||||||||||| |||||||| |||||| ||||||| | |||| |||||||||||||||    
T  1846170 aagtatgtgaagggacttgtggagtcgacattacttgctttgaaaagggaacggtgatggagagggttggaa 1846241  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 1846158 - 1846084
Alignment:
Q  89 tatgatttggtccagccgagtggaaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaag 163  Q
    |||| |||||||| || ||||||||||||||| ||||||| ||| ||||||| |||||  |||||||||||||||    
T  1846158 tatggtttggtcctgcagagtggaaagaatgtcggcttggcattgagctcttgccattttttcctatttctgaag 1846084  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 294
Target Start/End: Complemental strand, 6504969 - 6504802
Alignment:
Q  130 attcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaaggg 229  Q
    ||||||||  ||||||||  ||||||||||||||  || || |||||||   | ||||| || || ||||| ||||||||||| | |||||| || ||||    
T  6504969 attcagcttataccattggctcctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaataggg 6504870  T
Q  230 a---tggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagt 294  Q
    |   |||||||||||| || |||||||| ||  ||||| | ||  |||||||||||||||||||||||    
T  6504869 aaggtggtgttggagaaggatggaagggattcttatattcattggaaggaatttatgataatgaaagt 6504802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 46383027 - 46382872
Alignment:
Q  12 gaatatgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtctaacaaaagagacagtggtttatgatttggtccagccgagtgg 111  Q
    |||||||||||| |||||||| ||| || | |||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||  |||||    
T  46383027 gaatatgtatgataaagtgttcagtgaagagaataaggtaattggtatactttggtctaacaaaagagacagtggtctatggtttggtccagctaagtgg 46382928  T
Q  112 aaagaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtctt 167  Q
    || ||| |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  46382927 aaggaacgtagccttgggattcagctcttaccattgtttcctatttctgaagtctt 46382872  T

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