View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4510_low_3 (Length: 503)

Name: NF4510_low_3
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4510_low_3
NF4510_low_3
[»] chr1 (2 HSPs)
chr1 (14-487)||(27224017-27224490)
chr1 (343-398)||(27229890-27229945)
[»] chr5 (7 HSPs)
chr5 (14-479)||(20156701-20157166)
chr5 (165-224)||(13648162-13648221)
chr5 (166-224)||(13653217-13653275)
chr5 (166-224)||(13658690-13658748)
chr5 (151-200)||(26672153-26672202)
chr5 (151-200)||(26901439-26901488)
chr5 (151-200)||(26943751-26943800)
[»] chr7 (4 HSPs)
chr7 (100-473)||(41545410-41545783)
chr7 (91-128)||(26260654-26260691)
chr7 (91-131)||(26298227-26298267)
chr7 (171-211)||(41511445-41511485)
[»] chr8 (2 HSPs)
chr8 (173-215)||(560457-560499)
chr8 (171-207)||(3770202-3770238)
[»] chr6 (1 HSPs)
chr6 (164-194)||(13695614-13695644)
[»] scaffold0184 (1 HSPs)
scaffold0184 (174-211)||(11649-11686)
[»] chr4 (1 HSPs)
chr4 (163-196)||(33396746-33396779)


Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Original strand, 27224017 - 27224490
Alignment:
Q  14 catcaccaaactcttcttcatcaccataattcacagcaatttcagctccaaccttaactccactctcaatcacttgtacaaccaacttctcattgtaaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27224017 catcaccaaactcttcttcatcaccataattcacagcaatttcagctccaaccctaactccactctcaatcacttgtacaaccaacttctcattgaaaaa 27224116  T
Q  114 ttgatcagcaaacataggatatgttactaatggcaccccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27224117 ttgatcagcaaacataggatatgttactaatggcaccccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgct 27224216  T
Q  214 ttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcctctccctttcaccctttcttcaaatccatcttctaaaagccatttttcta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27224217 ttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcctctccctttcaccctttcttcaaatccatcttctaaaagccatttttcta 27224316  T
Q  314 cttcaccccacatatatgcttttctcaccacccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27224317 cttcaccccacatatatgcttttctcaccacccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacg 27224416  T
Q  414 attaagactaccaagacaagcataaattacagaattttcaggccatgaatcaagccacttcacatattgatttg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27224417 attaagactaccaagacaagcataaattacagaattttcaggccatgaatcaagccacttcacatattgatttg 27224490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 27229890 - 27229945
Alignment:
Q  343 acccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattg 398  Q
    ||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||    
T  27229890 acccaaataaaaggtctatttgaagcttcaaatcccaaaccaagctctatcaattg 27229945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 479
Target Start/End: Original strand, 20156701 - 20157166
Alignment:
Q  14 catcaccaaactcttcttcatcaccataattcacagcaatttcagctccaaccttaactccactctcaatcacttgtacaaccaacttctcattgtaaaa 113  Q
    ||||||||||||| |||||||| ||| ||| ||||||| ||||  |||| ||| | || ||| |||||||||||||||||||||| |||||||| |||||    
T  20156701 catcaccaaactcatcttcatctccaaaatgcacagcattttctactcccaccctcacaccagtctcaatcacttgtacaaccaatttctcattataaaa 20156800  T
Q  114 ttgatcagcaaacataggatatgttactaatggcaccccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgct 213  Q
    |||||||| |||||||||| ||||||  ||||| || ||| |||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  20156801 ttgatcagaaaacataggaaatgttatcaatggtacaccagcacatatagcttctaatgttgaattccatccacaatgtgtcaaaaatgcacctattgct 20156900  T
Q  214 ttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcctctccctttcaccctttcttcaaatccatcttctaaaagccatttttcta 313  Q
    ||||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |    
T  20156901 ttatgtgacaatatcaaaacttgtggagcccaacctctaatcaaaattcctctccctttaaccctctcttcaaatccatcttctaatagccatttttcca 20157000  T
Q  314 cttcaccccacatatatgcttttctcaccacccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattgttttggtgttacacg 413  Q
     |||||||||| ||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||| ||| ||||||||||| |||||||||||    
T  20157001 tttcaccccacttatatgcttttctcaccacccaaatgaatggtctattagtagcttccaatcccaaaccaatttccatcaattgtttaggtgttacacg 20157100  T
Q  414 attaagactaccaagacaagcataaattacagaattttcaggccatgaatcaagccacttcacata 479  Q
    ||||||||||||||||||| |||||||||| || |||| ||||||||||| |||||| ||||||||    
T  20157101 attaagactaccaagacaaacataaattactgagtttttaggccatgaattaagccaattcacata 20157166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 13648221 - 13648162
Alignment:
Q  165 ttccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa 224  Q
    |||||| ||||||||||| |||  |||||||||||| ||||| ||||| |||||||||||    
T  13648221 ttccaaagttgaattccacccattatgtgtcaaaaaagcaccaattgccttatgtgacaa 13648162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 13653275 - 13653217
Alignment:
Q  166 tccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa 224  Q
    ||||| || |||||||| |||| |||||||||||| ||||| ||||| |||||||||||    
T  13653275 tccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaa 13653217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 13658748 - 13658690
Alignment:
Q  166 tccaatgttgaattccaaccacaatgtgtcaaaaatgcacctattgctttatgtgacaa 224  Q
    ||||| || |||||||| |||| |||||||||||| ||||| |||||||| ||||||||    
T  13658748 tccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaa 13658690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 26672153 - 26672202
Alignment:
Q  151 ccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaa 200  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||||||    
T  26672153 ccaccacaaacactttccaacgttgaattccaaccattatgtgtcaaaaa 26672202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 26901439 - 26901488
Alignment:
Q  151 ccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaa 200  Q
    |||||||||| || ||| || |||||||||||||||| ||||||||||||    
T  26901439 ccaccacaaacactttctaacgttgaattccaaccactatgtgtcaaaaa 26901488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 26943751 - 26943800
Alignment:
Q  151 ccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaa 200  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||||||    
T  26943751 ccaccacaaacactttccaacgttgaattccaaccattatgtgtcaaaaa 26943800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 100 - 473
Target Start/End: Complemental strand, 41545783 - 41545410
Alignment:
Q  100 ttctcattgtaaaattgatcagcaaacataggatatgttactaatggcaccccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaa 199  Q
    |||||||| ||||| || ||||||||||| ||| |||||||||| |||||||||| | |||| |||||||||||||||||||| ||||||||||||||||    
T  41545783 ttctcattataaaactgttcagcaaacatgggaaatgttactaaaggcaccccacaagaaatcccttccaatgttgaattccatccacaatgtgtcaaaa 41545684  T
Q  200 atgcacctattgctttatgtgacaatatcaaaacttgtgggacccaacccttaaccaaaattcctctccctttcaccctttcttcaaatccatcttctaa 299  Q
    |   |||||||||||| ||||| | |||||| ||||||||  |||||||||| | |||||  |||||    ||||||||| | ||||| || |||||  |    
T  41545683 aaatacctattgctttgtgtgatagtatcaacacttgtggtgcccaaccctttatcaaaaagcctctattcttcacccttccctcaaacccttcttcata 41545584  T
Q  300 aagccatttttctacttcaccccacatatatgcttttctcaccacccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattgt 399  Q
     | |||||| || | |||  | |    ||||||   ||||| ||||||||| || || || || || || ||||||||||| ||||  ||| ||||||||    
T  41545583 taaccatttctccatttcctctcttccatatgcacctctcaacacccaaatgaatggcctttttgttgcctctaatcccaatccaacctctttcaattgt 41545484  T
Q  400 tttggtgttacacgattaagactaccaagacaagcataaattacagaattttcaggccatgaatcaagccactt 473  Q
    |  |||||| |||| || | |||||| |||||| ||||||| |||||||||  |||||||||||||||||||||    
T  41545483 tgaggtgttgcacggtttaaactaccgagacaaacataaataacagaatttgaaggccatgaatcaagccactt 41545410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 26260691 - 26260654
Alignment:
Q  91 acaaccaacttctcattgtaaaattgatcagcaaacat 128  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  26260691 acaagcaacttctcattgtaaaattgctcagcaaacat 26260654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 26298267 - 26298227
Alignment:
Q  91 acaaccaacttctcattgtaaaattgatcagcaaacatagg 131  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  26298267 acaagcaacttctcattgtaaaattgctcagcaaaaatagg 26298227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 41511485 - 41511445
Alignment:
Q  171 tgttgaattccaaccacaatgtgtcaaaaatgcacctattg 211  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  41511485 tgttgaattccaaccacaatgagtcaaaaatccaccaattg 41511445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 560457 - 560499
Alignment:
Q  173 ttgaattccaaccacaatgtgtcaaaaatgcacctattgcttt 215  Q
    ||||||||||||||||||| || ||||||||||| ||||||||    
T  560457 ttgaattccaaccacaatgagttaaaaatgcaccaattgcttt 560499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 3770202 - 3770238
Alignment:
Q  171 tgttgaattccaaccacaatgtgtcaaaaatgcacct 207  Q
    |||||||||||||||||||||||| |||||| |||||    
T  3770202 tgttgaattccaaccacaatgtgttaaaaatccacct 3770238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 13695614 - 13695644
Alignment:
Q  164 cttccaatgttgaattccaaccacaatgtgt 194  Q
    |||||||||||||||||||||||||||||||    
T  13695614 cttccaatgttgaattccaaccacaatgtgt 13695644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 11649 - 11686
Alignment:
Q  174 tgaattccaaccacaatgtgtcaaaaatgcacctattg 211  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  11649 tgaattccaaccacaatgagtcaaaaatgcaccaattg 11686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 33396746 - 33396779
Alignment:
Q  163 ccttccaatgttgaattccaaccacaatgtgtca 196  Q
    |||||||||||||||||||| |||||||||||||    
T  33396746 ccttccaatgttgaattccatccacaatgtgtca 33396779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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