View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_30 (Length: 216)
Name: NF4510_low_30
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 17657748 - 17657931
Alignment:
| Q |
19 |
cattttgcttgactccaaaggggaaaaagaagtagcttttgctcaatgtccccagcaattctatgctactctcaaagacgatccttttggaaatcaaatg |
118 |
Q |
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| T |
17657748 |
cattttgcttgactccaaaggggaaaaagaagtagcttttgctcaatgtccccagcaattctatgctacactcaaagacgatccttttggaaatcaaatg |
17657847 |
T |
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| Q |
119 |
gcaattttgtataaggtaagtgtaatttgataatacgaagttataaaatacaccatctgatcattattataagcaaaaactcac |
202 |
Q |
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| T |
17657848 |
gcaattttgtataaggtaagtgtaatttgataatacaaagttataaaatacaccatctgatcgttattataagcaaaaactcac |
17657931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 37025778 - 37025699
Alignment:
| Q |
35 |
aaaggggaaaaagaagtagcttttgctcaatgtccccagcaattctatgctactctcaaagacgatccttttggaaatca |
114 |
Q |
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| T |
37025778 |
aaaggggaaaaggaagttgcatttgttcaatgtccccaacaattctatgatggtctaaaagacgatccttttggaaatca |
37025699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 13333439 - 13333472
Alignment:
| Q |
164 |
aaatacaccatctgatcattattataagcaaaaa |
197 |
Q |
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| T |
13333439 |
aaatacaccatctgatcactattataagcaaaaa |
13333472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 41056880 - 41056913
Alignment:
| Q |
164 |
aaatacaccatctgatcattattataagcaaaaa |
197 |
Q |
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| T |
41056880 |
aaatacaccatctgatcactattataagcaaaaa |
41056913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 17625788 - 17625755
Alignment:
| Q |
164 |
aaatacaccatctgatcattattataagcaaaaa |
197 |
Q |
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| T |
17625788 |
aaatacaccatctgatcactattataagcaaaaa |
17625755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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