View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4510_low_5 (Length: 455)
Name: NF4510_low_5
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 28938687 - 28938753
Alignment:
| Q |
371 |
aaatcttcatgaaaaacaacatgtctaaagacaaatatttctatagaatcaatatcatggagattgt |
437 |
Q |
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| T |
28938687 |
aaatgttcatgaaaaacaacatgtctaaagacaaatatttctatagaatgaatatcatggagattgt |
28938753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 20698909 - 20698985
Alignment:
| Q |
361 |
ataaggaagaaaatcttcatgaaaaacaacatgtctaaagacaaatatttctatagaatcaatatcatggagattgt |
437 |
Q |
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| T |
20698909 |
ataaggaaggaagtgttcatgaaaaataacatgtttagatacaaatatttctctagaatgaatatcaaggagattgt |
20698985 |
T |
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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 15886690 - 15886810
Alignment:
| Q |
17 |
cataagtttttggttcagtttgagaatgcaaagacataacaaaatgagaatgagcatcagataaattgtggtgagacatataattggaaatagggcaagg |
116 |
Q |
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| T |
15886690 |
cataagttttgggttcagtgtgagagtgtaaagacatgacaaaatgagaatgagtgttagataaattttgatgagacacataattggaaataggataagg |
15886789 |
T |
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| Q |
117 |
agagacatgtacattattaca |
137 |
Q |
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| T |
15886790 |
agaaacatgtaaatgattaca |
15886810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 44230128 - 44230075
Alignment:
| Q |
359 |
ggataaggaagaaaatcttcatgaaaaacaacatgtctaaagacaaatatttct |
412 |
Q |
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| T |
44230128 |
ggataaggtaaaaaatattcatgaaaaacaacatgtctagaaacaaatatttct |
44230075 |
T |
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