View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4510_low_7 (Length: 421)
Name: NF4510_low_7
Description: NF4510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4510_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 7608069 - 7607687
Alignment:
| Q |
12 |
aacctgtggaatcttaacaatgtatatttggcttttcaaatagtatccgtctttagctttggccattttctgtttttctttttcatcctttagagagacc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7608069 |
aacctgtggaatcttaacaatgtatatttggcttttcaaatagtatccgtctttagctttggccattttctgtttttctttttcatcctttagagagacc |
7607970 |
T |
|
| Q |
112 |
aattcagtatgataggatcttccaaaatcatcgacctcgacacctagaagtgaaccctgttagccacatcatatttaacttgagaactcatgaaacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607969 |
aattcagtatgataggatcttccaaaatcatcgacctcgacacctagaagtgaaccctgttagccacatcatatttaacttgagaactcatgaaacaaaa |
7607870 |
T |
|
| Q |
212 |
gaaaatacaagtctgcaaaagttgaaggaaaaattagtatgcattcgcatcatgagataaaatgataaaactaagaaacaggaaaaaactccatactgga |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
7607869 |
gaaaatacaagtctgcaacagttgaaggaaaaattagtatgcattcgcatcatgagataaaatgataaaactaggaaacaggacaacactccatactgga |
7607770 |
T |
|
| Q |
312 |
acgaccttgaccaaatatcaatgatacaagatgaacaaatgagaaacacaacattgttaagcaaatgtacaatgatgatgttc |
394 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607769 |
accaccttgaccaaatatcaatgatacaagatgaacaaataagaaacacaacattgttaagcaaatgtacaatgatgatgttc |
7607687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University