View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511-Insertion-3 (Length: 528)
Name: NF4511-Insertion-3
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511-Insertion-3 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Complemental strand, 4257942 - 4257421
Alignment:
| Q |
7 |
actcccaaagtaatcagaaaattttattaaagcatcaaatatatatagggagcgtatggggaagttttcaatgctccttagcacattcttggaactggta |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257942 |
actcccaaagtaatcagataattttattaaagcatcgaatatatatagggagcgtatggggaagttttcaatgctccttagcacattcttggaactggta |
4257843 |
T |
|
| Q |
107 |
tttatagccaatctcctaat---cattgcatcagagatttgttcatgaacatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatga |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257842 |
tttatagccaatctcctaataatcattgcatcagagatttgttcatgaccatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatga |
4257743 |
T |
|
| Q |
204 |
tcatttctcgtaacaaatcatggattcgacagcttgtcgcttaaccatcatattgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257742 |
tcatttctcgtaacaaatcatggattcgacagcttgtcgctttaccatcatagtgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaa |
4257643 |
T |
|
| Q |
304 |
atattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgccgaatcaaccttgaactccgaattgagtaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257642 |
atattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgccgaatcaaccttgaactccgaattgagtaa |
4257543 |
T |
|
| Q |
404 |
tcttctgggtatataccaaaatacaagacgcatgacttcaaataatgtggcaagtcatcataactcatgcctaaaattcttgttatattagctaaatgtg |
503 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257542 |
tcttctgggtatataccaaaatacaagacacatgacttcaaataatgtggcaagtcatcataactcatgcctaaaattcttgttatattagctaaatgtg |
4257443 |
T |
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| Q |
504 |
gattatggtctaactccaaact |
525 |
Q |
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| T |
4257442 |
gattacggtctaactccgaact |
4257421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 22620436 - 22620542
Alignment:
| Q |
275 |
accaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgcc |
374 |
Q |
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| T |
22620436 |
accaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgcc |
22620535 |
T |
|
| Q |
375 |
gaatcaa |
381 |
Q |
| |
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||||||| |
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| T |
22620536 |
gaatcaa |
22620542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 2760274 - 2760223
Alignment:
| Q |
176 |
aaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
227 |
Q |
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| T |
2760274 |
aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatgga |
2760223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 2837768 - 2837876
Alignment:
| Q |
266 |
gagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
365 |
Q |
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||||| |||| || ||||||||| ||||| |||| ||| |||||||| | |||| |||||||| | ||| | | ||| ||| ||||||||||| |||| |
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| T |
2837768 |
gagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaacccctcagcta |
2837867 |
T |
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| Q |
366 |
tccattgcc |
374 |
Q |
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||||||||| |
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| T |
2837868 |
tccattgcc |
2837876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 2854978 - 2855086
Alignment:
| Q |
266 |
gagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
365 |
Q |
| |
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||||| |||| || ||||||||| ||||| |||| ||| |||||||| | |||| |||||||| | ||| | | ||| ||| ||||||||||| |||| |
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| T |
2854978 |
gagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaacccctcagcta |
2855077 |
T |
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| Q |
366 |
tccattgcc |
374 |
Q |
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| T |
2855078 |
tccattgcc |
2855086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 5223 - 5281
Alignment:
| Q |
169 |
atgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
227 |
Q |
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|||||||||| | ||||||||||||||||| ||||||| ||| || || |||||||||| |
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| T |
5223 |
atgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatgga |
5281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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