View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511-Insertion-4 (Length: 516)
Name: NF4511-Insertion-4
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 289 - 516
Target Start/End: Complemental strand, 45701056 - 45700820
Alignment:
| Q |
289 |
gccatggccctctccagtccc-acctagcccacctctgcccttgtacgaatcaaattatctttagttgaaagtcgatcatttaacaatcctcgagcaaac |
387 |
Q |
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| T |
45701056 |
gccatggccctctccagtccccacctagcccgcctctatccttgtacgaatcaaattatctttagttgaaagtcgatcatctaacaatcctcaagcaaac |
45700957 |
T |
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| Q |
388 |
atttgataactatttcaaagtaaccaaattattccaagttatg--------ttatccaaaggagaatatgctattgatttaaaattagatatcaacacat |
479 |
Q |
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| T |
45700956 |
atttgataactatttcaaagtaaccaaattattccaagttatgttattatgttatccaaaggagaatatgctattgatttaaaattagatatcaacacat |
45700857 |
T |
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| Q |
480 |
aagtttctttgaccataaacatgccaacgaagagtga |
516 |
Q |
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| T |
45700856 |
aagcttctttgaccataaacatgccaacgaagagtga |
45700820 |
T |
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Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 45701337 - 45701194
Alignment:
| Q |
8 |
ctaaactcacgaaaacattgagaccaacatgaatctttttccatctcaaaattaaattctatcgtgaaagtttttcttttgagaggaaaaattgtatgtg |
107 |
Q |
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| T |
45701337 |
ctaaactcacgaaaacattaagaccaacatgaatctttttccatctcaaaattaaattctattgtgaaagtttttcttttgagaggaaaagttgtatgtg |
45701238 |
T |
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| Q |
108 |
tttaatagtcatattgtaaaatttaaaactaattttcccatattt |
152 |
Q |
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| T |
45701237 |
tttaatagtcatattgtaaaatttaaaattaa-tttcccatattt |
45701194 |
T |
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